Desulfovibrio vulgaris Hildenborough Module 200 Residual: 0.41

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Summary

Residual: 0.41 Score: -60.0283 version: dvh_cmonkey_11_Mar_02

Members

DVU2457 Uncharacterized protein

Details for DVU2457 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2457

Tuberculist Genomic Region

DVUA0062 Conserved domain protein

Details for DVUA0062 - Conserved domain protein

GO Terms: GO:0005524, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0062

Tuberculist Genomic Region

DVUA0040 Polysaccharide biosynthesis protein, putative

Details for DVUA0040 - Polysaccharide biosynthesis protein, putative

GO Terms: GO:0045226

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0040

Tuberculist Genomic Region

DVUA0063 Orn/DAP/Arg family decarboxylase

Details for DVUA0063 - Orn/DAP/Arg family decarboxylase

GO Terms: GO:0016831

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0063

Tuberculist Genomic Region

DVUA0045 Aminotransferase, DegT/DnrJ/EryC1/StrS family

Details for DVUA0045 - Aminotransferase, DegT/DnrJ/EryC1/StrS family

GO Terms: GO:0030170, GO:0008483

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0045

Tuberculist Genomic Region

DVU0086 Uncharacterized protein

Details for DVU0086 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0086

Tuberculist Genomic Region

DVUA0048 Exopolysaccharide production protein, putative

Details for DVUA0048 - Exopolysaccharide production protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0048

Tuberculist Genomic Region

DVU2458 Uncharacterized protein

Details for DVU2458 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2458

Tuberculist Genomic Region

DVUA0055 Membrane protein, putative

Details for DVUA0055 - Membrane protein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0055

Tuberculist Genomic Region

DVU3105 Uncharacterized protein

Details for DVU3105 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3105

Tuberculist Genomic Region

DVUA0057 Sigma-54 dependent transcriptional regulator/response regulator

Details for DVUA0057 - Sigma-54 dependent transcriptional regulator/response regulator

GO Terms: GO:0005524, GO:0000160, GO:0006355, GO:0043565, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0057

Tuberculist Genomic Region

DVUA0047 Uncharacterized protein

Details for DVUA0047 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0047

Tuberculist Genomic Region

DVUA0058 BNR/Asp-box repeat protein

Details for DVUA0058 - BNR/Asp-box repeat protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0058

Tuberculist Genomic Region

DVUA0141 Uncharacterized protein

Details for DVUA0141 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0141

Tuberculist Genomic Region

DVUA0059 Uncharacterized protein

Details for DVUA0059 - Uncharacterized protein

GO Terms: GO:0005524, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0059

Tuberculist Genomic Region

DVUA0146 Uncharacterized protein

Details for DVUA0146 - Uncharacterized protein

GO Terms: GO:0005737, GO:0009405, GO:0050708

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0146

Tuberculist Genomic Region

DVUA0060 Membrane protein, putative

Details for DVUA0060 - Membrane protein, putative

GO Terms: GO:0016020, GO:0016747

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVUA0060

Tuberculist Genomic Region

Displaying 1 - 17 of 17

Motifs

Motif 1: e-value: 0.037 e-value: 3

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0629

Transcriptional regulator, TetR family
 down-regulates -0.11

DVU0629

DVU0679

Sigma-54 dependent transcriptional regulator/response regulator
 up-regulates 0.23

DVU0679

DVU1063

Transcriptional regulatory protein
 up-regulates 0.13

DVU1063

DVU1744

DNA-binding protein
 up-regulates 0.27

DVU1744

DVU2097

Transcriptional regulator, putative
 down-regulates -0.13

DVU2097

DVU2114

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.22

DVU2114

DVU2532

Transcriptional regulator, MerR family
 down-regulates -0.17

DVU2532

DVU2819

Transcriptional regulator, TetR family
 up-regulates 0.19

DVU2819

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000271 polysaccharide biosynthetic process 7 0.02 1 0.0190
BP GO:0005976 polysaccharide metabolic process 7 0.02 1 0.0190
BP GO:0033692 cellular polysaccharide biosynthetic pro... 7 0.02 1 0.0190
BP GO:0034637 cellular carbohydrate biosynthetic proce... 7 0.02 1 0.0190
BP GO:0044264 cellular polysaccharide metabolic proces... 7 0.02 1 0.0190
BP GO:0016051 carbohydrate biosynthetic process 11 0.03 1 0.0298
BP GO:0044262 cellular carbohydrate metabolic process 11 0.03 1 0.0298
BP GO:0044723 single-organism carbohydrate metabolic p... 16 0.04 1 0.0434
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016831 carboxy-lyase activity 6 0.02 1 0.0230
MF GO:0043168 anion binding 371 1.45 4 0.0270
MF GO:0016830 carbon-carbon lyase activity 10 0.04 1 0.0380
MF GO:0030170 pyridoxal phosphate binding 10 0.04 1 0.0380
MF GO:0043167 ion binding 422 1.65 4 0.0430

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