Desulfovibrio vulgaris Hildenborough Module 207 Residual: 0.37 | Syntrophy Portal

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Summary

Residual: 0.37 Score: -60.1402 version: dvh_cmonkey_11_Mar_02

Members

DVU2288 Hydrogenase, CooL subunit, putative Details for DVU2288 - Hydrogenase, CooL subunit, putative GO Terms: GO:0051536, GO:0055114 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2288 Tuberculist Genomic Region	DVU3029 Phosphate acetyltransferase Details for DVU3029 - Phosphate acetyltransferase GO Terms: GO:0006085, GO:0005737, GO:0008959 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3029 Tuberculist Genomic Region
DVU2290 Hydrogenase, CooU subunit, putative Details for DVU2290 - Hydrogenase, CooU subunit, putative GO Terms: GO:0008137 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2290 Tuberculist Genomic Region	DVU3030 Acetate kinase Details for DVU3030 - Acetate kinase GO Terms: GO:0005524, GO:0008776, GO:0006085, GO:0005737, GO:0000287, GO:0006082 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3030 Tuberculist Genomic Region
DVU2292 Probable hydrogenase nickel incorporation protein HypA 2 Details for DVU2292 - Probable hydrogenase nickel incorporation protein HypA 2 GO Terms: GO:0006464, GO:0016151 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2292 Tuberculist Genomic Region	DVU3031 Uncharacterized protein Details for DVU3031 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3031 Tuberculist Genomic Region
DVU2293 Iron-sulfur protein CooF Details for DVU2293 - Iron-sulfur protein CooF GO Terms: GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2293 Tuberculist Genomic Region	DVU3032 Uncharacterized protein Details for DVU3032 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3032 Tuberculist Genomic Region
DVU3024 Uncharacterized protein Details for DVU3024 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3024 Tuberculist Genomic Region	DVU2286 Hydrogenase, CooM subunit, putative Details for DVU2286 - Hydrogenase, CooM subunit, putative GO Terms: GO:0016021 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2286 Tuberculist Genomic Region
DVU3025 Pyruvate synthase Details for DVU3025 - Pyruvate synthase GO Terms: GO:0051539, GO:0022900, GO:0005506, GO:0019164, GO:0030976 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3025 Tuberculist Genomic Region	DVU2289 Hydrogenase, CooX subunit, putative Details for DVU2289 - Hydrogenase, CooX subunit, putative GO Terms: GO:0051536 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2289 Tuberculist Genomic Region
DVU3027 Glycolate oxidase, subunit GlcD Details for DVU3027 - Glycolate oxidase, subunit GlcD GO Terms: GO:0008762, GO:0050660 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3027 Tuberculist Genomic Region	DVU2291 Carbon monoxide-induced hydrogenase CooH, putative Details for DVU2291 - Carbon monoxide-induced hydrogenase CooH, putative GO Terms: GO:0051287, GO:0016651, GO:0048038 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2291 Tuberculist Genomic Region

Motifs

Motif 1:

Motif 2:

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0230 Transcriptional regulator cII, putative	down-regulates	-0.19	DVU0230
DVU1744 DNA-binding protein	down-regulates	-0.11	DVU1744
DVU2359 Sigma-54 dependent transcriptional regulator	down-regulates	-0.13	DVU2359
DVU2644 Transcriptional regulator, GntR family	down-regulates	-0.12	DVU2644
DVU2802 Transcriptional regulator, GntR family	down-regulates	-0.20	DVU2802
DVU3381 Transcriptional regulatory protein zraR	down-regulates	-0.10	DVU3381

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006790	sulfur compound metabolic process	4	0.02	1	0.0216
BP	GO:0044272	sulfur compound biosynthetic process	4	0.02	1	0.0216
BP	GO:0006464	cellular protein modification process	7	0.04	1	0.0376
BP	GO:0036211	protein modification process	7	0.04	1	0.0376
BP	GO:0009108	coenzyme biosynthetic process	9	0.05	1	0.0483
BP	GO:0043412	macromolecule modification	9	0.05	1	0.0483

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0051536	iron-sulfur cluster binding	110	0.69	4	0.0028
MF	GO:0051540	metal cluster binding	110	0.69	4	0.0028
MF	GO:0016651	oxidoreductase activity, acting on NAD(P...	3	0.02	1	0.0186
MF	GO:0016655	oxidoreductase activity, acting on NAD(P...	3	0.02	1	0.0186
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activ...	5	0.03	1	0.0309

Essentiality

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