Desulfovibrio vulgaris Hildenborough Module 232 Residual: 0.49 | Syntrophy Portal

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Summary

Residual: 0.49 Score: -46.4501 version: dvh_cmonkey_11_Mar_02

Members

DVU0302 Chemotaxis protein CheX, putative Details for DVU0302 - Chemotaxis protein CheX, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0302 Tuberculist Genomic Region	DVU0838 UPF0109 protein DVU_0838 Details for DVU0838 - UPF0109 protein DVU_0838 GO Terms: GO:0003723 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0838 Tuberculist Genomic Region
DVU1190 Sensory box/GGDEF domain/EAL domain protein Details for DVU1190 - Sensory box/GGDEF domain/EAL domain protein GO Terms: GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1190 Tuberculist Genomic Region	DVU0936 Uncharacterized protein Details for DVU0936 - Uncharacterized protein GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0936 Tuberculist Genomic Region
DVU1372 Membrane protein, putative Details for DVU1372 - Membrane protein, putative GO Terms: GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1372 Tuberculist Genomic Region	DVU0942 Transcriptional regulator, Fur family Details for DVU0942 - Transcriptional regulator, Fur family GO Terms: GO:0003677, GO:0003700 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0942 Tuberculist Genomic Region
DVU1373 Cell division initiation protein DivIVA Details for DVU1373 - Cell division initiation protein DivIVA GO Terms: GO:0007049, GO:0051301, GO:0005737 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1373 Tuberculist Genomic Region	DVU0986 Uncharacterized protein Details for DVU0986 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0986 Tuberculist Genomic Region
DVU1374 UPF0235 protein DVU_1374 Details for DVU1374 - UPF0235 protein DVU_1374 GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1374 Tuberculist Genomic Region	DVU0987 Heavy metal-binding domain protein Details for DVU0987 - Heavy metal-binding domain protein GO Terms: GO:0046872, GO:0030001 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0987 Tuberculist Genomic Region
DVU1375 Uncharacterized protein Details for DVU1375 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1375 Tuberculist Genomic Region	DVU1093 HAD-superfamily hydrolase, subfamily IA, variant 3 Details for DVU1093 - HAD-superfamily hydrolase, subfamily IA, variant 3 GO Terms: GO:0016787 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1093 Tuberculist Genomic Region
DVU1377 Acetolactate synthase, small subunit Details for DVU1377 - Acetolactate synthase, small subunit GO Terms: GO:0003984, GO:0016597, GO:0009082 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1377 Tuberculist Genomic Region	DVU1367 Sec-independent protein translocase protein TatA Details for DVU1367 - Sec-independent protein translocase protein TatA GO Terms: GO:0033281, GO:0005887, GO:0009306, GO:0008320, GO:0043953 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1367 Tuberculist Genomic Region
DVU1378 Ketol-acid reductoisomerase Details for DVU1378 - Ketol-acid reductoisomerase GO Terms: GO:0050662, GO:0009097, GO:0004455, GO:0009099 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1378 Tuberculist Genomic Region	DVU1392 NLP/P60 family protein Details for DVU1392 - NLP/P60 family protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1392 Tuberculist Genomic Region
DVU2532 Transcriptional regulator, MerR family Details for DVU2532 - Transcriptional regulator, MerR family GO Terms: GO:0003677, GO:0006355 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2532 Tuberculist Genomic Region	DVU1612 ACT domain protein Details for DVU1612 - ACT domain protein GO Terms: GO:0016597, GO:0008152 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1612 Tuberculist Genomic Region
DVU2965 Uncharacterized protein Details for DVU2965 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2965 Tuberculist Genomic Region	DVU1834 Pyruvate carboxylase Details for DVU1834 - Pyruvate carboxylase GO Terms: GO:0005524, GO:0004075, GO:0006094, GO:0046872, GO:0004736 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1834 Tuberculist Genomic Region
DVU0837 Ribosome maturation factor RimM Details for DVU0837 - Ribosome maturation factor RimM GO Terms: GO:0006364, GO:0042274, GO:0005840, GO:0043022 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0837 Tuberculist Genomic Region	DVU3187 DNA-binding protein HU Details for DVU3187 - DNA-binding protein HU GO Terms: GO:0003677 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3187 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 0.04 Motif 2:

e-value: 3.5

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU2394 Sigma-54 dependent transcriptional regulator/response regulator	up-regulates	0.17	DVU2394
DVU2989 Psp operon transcriptional activator	down-regulates	-0.15	DVU2989
DVU3084 Transcriptional regulator, putative	up-regulates	0.17	DVU3084
DVU3111 Transcriptional regulator, Crp/Fnr family	down-regulates	-0.11	DVU3111

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006396	RNA processing	5	0.03	1	0.0270
BP	GO:0034470	ncRNA processing	5	0.03	1	0.0270
BP	GO:0034660	ncRNA metabolic process	5	0.03	1	0.0270
BP	GO:0007049	cell cycle	9	0.05	1	0.0483

Category: CC
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
CC	GO:0033281	TAT protein transport complex	4	0.02	1	0.0200
CC	GO:0043234	protein complex	10	0.05	1	0.0500

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0003984	acetolactate synthase activity	4	0.04	1	0.0370
MF	GO:0016597	amino acid binding	4	0.04	1	0.0370
MF	GO:0016744	transferase activity, transferring aldeh...	4	0.04	1	0.0370
MF	GO:0003676	nucleic acid binding	222	2.08	5	0.0420

Essentiality

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