Desulfovibrio vulgaris Hildenborough Module 248 Residual: 0.42

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Summary

Residual: 0.42 Score: -53.0255 version: dvh_cmonkey_11_Mar_02

Members

DVU1199 Riboflavin biosynthesis protein RibBA

Details for DVU1199 - Riboflavin biosynthesis protein RibBA

GO Terms: GO:0008686, GO:0005525, GO:0003935, GO:0000287, GO:0030145, GO:0009231, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1199

Tuberculist Genomic Region

DVU1304 50S ribosomal protein L4

Details for DVU1304 - 50S ribosomal protein L4

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1304

Tuberculist Genomic Region

DVU1314 50S ribosomal protein L24

Details for DVU1314 - 50S ribosomal protein L24

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1314

Tuberculist Genomic Region

DVU1305 50S ribosomal protein L23

Details for DVU1305 - 50S ribosomal protein L23

GO Terms: GO:0000166, GO:0019843, GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1305

Tuberculist Genomic Region

DVU1623 CTP synthase

Details for DVU1623 - CTP synthase

GO Terms: GO:0044210, GO:0005524, GO:0003883, GO:0006541

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1623

Tuberculist Genomic Region

DVU1306 50S ribosomal protein L2

Details for DVU1306 - 50S ribosomal protein L2

GO Terms: GO:0015934, GO:0019843, GO:0003735, GO:0016740, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1306

Tuberculist Genomic Region

DVU2226 Acetyl-CoA carboxylase, biotin carboxylase, putative

Details for DVU2226 - Acetyl-CoA carboxylase, biotin carboxylase, putative

GO Terms: GO:0005524, GO:0004075, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2226

Tuberculist Genomic Region

DVU1307 30S ribosomal protein S19

Details for DVU1307 - 30S ribosomal protein S19

GO Terms: GO:0019843, GO:0015935, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1307

Tuberculist Genomic Region

DVU1197 N utilization substance protein B homolog

Details for DVU1197 - N utilization substance protein B homolog

GO Terms: GO:0006353, GO:0003723, GO:0006355

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1197

Tuberculist Genomic Region

DVU1315 50S ribosomal protein L5

Details for DVU1315 - 50S ribosomal protein L5

GO Terms: GO:0019843, GO:0005840, GO:0003735, GO:0000049, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1315

Tuberculist Genomic Region

DVU1198 6,7-dimethyl-8-ribityllumazine synthase

Details for DVU1198 - 6,7-dimethyl-8-ribityllumazine synthase

GO Terms: GO:0000906, GO:0009231, GO:0009349, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1198

Tuberculist Genomic Region

DVU1321 50S ribosomal protein L30

Details for DVU1321 - 50S ribosomal protein L30

GO Terms: GO:0015934, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1321

Tuberculist Genomic Region

DVU1203 Serine hydroxymethyltransferase

Details for DVU1203 - Serine hydroxymethyltransferase

GO Terms: GO:0005737, GO:0019264, GO:0004372, GO:0030170, GO:0035999

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1203

Tuberculist Genomic Region

DVU1322 50S ribosomal protein L15

Details for DVU1322 - 50S ribosomal protein L15

GO Terms: GO:0015934, GO:0019843, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1322

Tuberculist Genomic Region

DVU1204 3-oxoacyl-[acyl-carrier-protein] synthase 2

Details for DVU1204 - 3-oxoacyl-[acyl-carrier-protein] synthase 2

GO Terms: GO:0033817, GO:0006633

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1204

Tuberculist Genomic Region

DVU2929 DNA-directed RNA polymerase subunit beta'

Details for DVU2929 - DNA-directed RNA polymerase subunit beta'

GO Terms: GO:0003677, GO:0003899, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2929

Tuberculist Genomic Region

Displaying 1 - 16 of 16

Motifs

Motif 1: e-value: 230 e-value: 4600

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0813

Heat-inducible transcription repressor HrcA
 down-regulates -0.17

DVU0813

DVU1547

Sensory box protein
 down-regulates -0.20

DVU1547

DVU2394

Sigma-54 dependent transcriptional regulator/response regulator
 down-regulates -0.23

DVU2394

DVU2557

Bifunctional ligase/repressor BirA
down-regulates -0.10

DVU2557

DVU2802

Transcriptional regulator, GntR family
 down-regulates -0.31

DVU2802

DVU2835

Transcriptional regulator, putative
 down-regulates -0.26

DVU2835

DVU2894

Sigma-54 dependent transcriptional regulator
 down-regulates -0.16

DVU2894

DVU3142

Sigma-54 dependent transcriptional regulator
 down-regulates -0.17

DVU3142

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0034654 nucleobase-containing compound biosynthe... 41 0.22 2 0.0121
BP GO:0009142 nucleoside triphosphate biosynthetic pro... 3 0.02 1 0.0162
BP GO:0009201 ribonucleoside triphosphate biosynthetic... 3 0.02 1 0.0162
BP GO:0009141 nucleoside triphosphate metabolic proces... 4 0.02 1 0.0216
BP GO:0009199 ribonucleoside triphosphate metabolic pr... 4 0.02 1 0.0216
BP GO:0044271 cellular nitrogen compound biosynthetic ... 60 0.33 2 0.0261
BP GO:0019438 aromatic compound biosynthetic process 61 0.33 2 0.0270
BP GO:0018130 heterocycle biosynthetic process 67 0.36 2 0.0326
BP GO:1901362 organic cyclic compound biosynthetic pro... 70 0.38 2 0.0356
BP GO:0006139 nucleobase-containing compound metabolic... 73 0.40 2 0.0387
BP GO:0006213 pyrimidine nucleoside metabolic process 8 0.04 1 0.0429
BP GO:0009218 pyrimidine ribonucleotide metabolic proc... 8 0.04 1 0.0429
BP GO:0009220 pyrimidine ribonucleotide biosynthetic p... 8 0.04 1 0.0429
BP GO:0046131 pyrimidine ribonucleoside metabolic proc... 8 0.04 1 0.0429
BP GO:0046132 pyrimidine ribonucleoside biosynthetic p... 8 0.04 1 0.0429
BP GO:0046134 pyrimidine nucleoside biosynthetic proce... 8 0.04 1 0.0429
BP GO:0006220 pyrimidine nucleotide metabolic process 9 0.05 1 0.0483
BP GO:0006221 pyrimidine nucleotide biosynthetic proce... 9 0.05 1 0.0483
BP GO:0006351 transcription, DNA-templated 9 0.05 1 0.0483
BP GO:0032774 RNA biosynthetic process 9 0.05 1 0.0483
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 23 0.23 3 0.0007
CC GO:0030529 ribonucleoprotein complex 23 0.23 3 0.0007
CC GO:0043229 intracellular organelle 23 0.23 3 0.0007
CC GO:0043232 intracellular non-membrane-bounded organ... 23 0.23 3 0.0007
CC GO:0044422 organelle part 26 0.26 3 0.0010
CC GO:0044444 cytoplasmic part 27 0.27 3 0.0011
CC GO:0032991 macromolecular complex 33 0.34 3 0.0021
CC GO:0005737 cytoplasm 86 0.88 4 0.0022
CC GO:0005622 intracellular 104 1.06 4 0.0047
CC GO:0044424 intracellular part 104 1.06 4 0.0047
CC GO:0043226 organelle 48 0.49 3 0.0063
CC GO:0043228 non-membrane-bounded organelle 48 0.49 3 0.0063
CC GO:0005623 cell 145 1.48 4 0.0181
CC GO:0044464 cell part 145 1.48 4 0.0181
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003723 RNA binding 54 0.42 4 0.0005
MF GO:0003676 nucleic acid binding 222 1.73 5 0.0178
MF GO:0016866 intramolecular transferase activity 3 0.02 1 0.0233

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