Desulfovibrio vulgaris Hildenborough Module 284 Residual: 0.50 | Syntrophy Portal

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Summary

Residual: 0.50 Score: -32.1361 version: dvh_cmonkey_11_Mar_02

Members

DVU0181 Molybdenum ABC transporter, permease protein Details for DVU0181 - Molybdenum ABC transporter, permease protein GO Terms: GO:0016021, GO:0015098 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0181 Tuberculist Genomic Region	DVU2147 L-serine dehydratase, putative Details for DVU2147 - L-serine dehydratase, putative GO Terms: GO:0051539, GO:0003941, GO:0006094 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2147 Tuberculist Genomic Region
DVU0185 Uncharacterized protein Details for DVU0185 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0185 Tuberculist Genomic Region	DVU2204 Tryptophanase Details for DVU2204 - Tryptophanase GO Terms: GO:0030170, GO:0009034 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2204 Tuberculist Genomic Region
DVU0283 AhpF family protein/thioredoxin reductase Details for DVU0283 - AhpF family protein/thioredoxin reductase GO Terms: GO:0050660, GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0283 Tuberculist Genomic Region	DVU2303 Conserved domain protein Details for DVU2303 - Conserved domain protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2303 Tuberculist Genomic Region
DVU1416 Uncharacterized protein Details for DVU1416 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1416 Tuberculist Genomic Region	DVU3000 Uncharacterized protein Details for DVU3000 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3000 Tuberculist Genomic Region
DVU2334 Uncharacterized protein Details for DVU2334 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2334 Tuberculist Genomic Region	DVU3007 Uncharacterized protein Details for DVU3007 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3007 Tuberculist Genomic Region
DVU2346 Uncharacterized protein Details for DVU2346 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2346 Tuberculist Genomic Region	DVU3034 Uncharacterized protein Details for DVU3034 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3034 Tuberculist Genomic Region
DVU0008 Uncharacterized protein Details for DVU0008 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0008 Tuberculist Genomic Region	DVU3057 Oxygen-independent coproporphyrinogen III oxidase, putative Details for DVU3057 - Oxygen-independent coproporphyrinogen III oxidase, putative GO Terms: GO:0004109, GO:0005737, GO:0051536, GO:0006779 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3057 Tuberculist Genomic Region
DVU0877 Uncharacterized protein Details for DVU0877 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0877 Tuberculist Genomic Region	DVU3214 Phosphoenolpyruvate synthase-related protein Details for DVU3214 - Phosphoenolpyruvate synthase-related protein GO Terms: GO:0005524, GO:0016301 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU3214 Tuberculist Genomic Region
DVU1899 DNA repair protein RecO Details for DVU1899 - DNA repair protein RecO GO Terms: GO:0006310, GO:0006281 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1899 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 70 Motif 2:

e-value: 500

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU2275 Sigma-54 dependent transcriptional regulator	down-regulates	-0.13	DVU2275
DVU2785 Transcriptional regulator, GntR family	up-regulates	0.15	DVU2785
DVU2799 Transcriptional regulator, MarR family	down-regulates	-0.23	DVU2799

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0006310	DNA recombination	4	0.01	1	0.0110
BP	GO:0006259	DNA metabolic process	17	0.05	1	0.0460

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0048037	cofactor binding	56	0.22	2	0.0172
MF	GO:0016627	oxidoreductase activity, acting on the C...	5	0.02	1	0.0194
MF	GO:0030170	pyridoxal phosphate binding	10	0.04	1	0.0385
MF	GO:0050660	flavin adenine dinucleotide binding	10	0.04	1	0.0385

Essentiality

Comments

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