Desulfovibrio vulgaris Hildenborough Module 299 Residual: 0.44 | Syntrophy Portal

×

Error message

Unable to create CTools CSS cache directory. Check the permissions on your files directory.
Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.44 Score: -54.0888 version: dvh_cmonkey_11_Mar_02

Members

DVU0442 PhoH-related protein Details for DVU0442 - PhoH-related protein GO Terms: GO:0005524 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0442 Tuberculist Genomic Region	DVU1721 Uncharacterized protein Details for DVU1721 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1721 Tuberculist Genomic Region
DVU1970 Response regulator Details for DVU1970 - Response regulator GO Terms: GO:0000160 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1970 Tuberculist Genomic Region	DVU1967 Transcriptional regulator, rrf2 protein, putative Details for DVU1967 - Transcriptional regulator, rrf2 protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1967 Tuberculist Genomic Region
DVU0185 Uncharacterized protein Details for DVU0185 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0185 Tuberculist Genomic Region	DVU1968 Oxidoreductase, putative Details for DVU1968 - Oxidoreductase, putative GO Terms: GO:0016491 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1968 Tuberculist Genomic Region
DVU0443 Exonulcease, putative Details for DVU0443 - Exonulcease, putative GO Terms: GO:0004527, GO:0003676 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0443 Tuberculist Genomic Region	DVU1969 Uncharacterized protein Details for DVU1969 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1969 Tuberculist Genomic Region
DVU0445 CBS domain protein Details for DVU0445 - CBS domain protein GO Terms: GO:0008773 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0445 Tuberculist Genomic Region	DVU2168 Major head protein Details for DVU2168 - Major head protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2168 Tuberculist Genomic Region
DVU1105 Uncharacterized protein Details for DVU1105 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1105 Tuberculist Genomic Region	DVU2171 Portal protein Details for DVU2171 - Portal protein GO Terms: GO:0003677, GO:0019028 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2171 Tuberculist Genomic Region
DVU1414 Sensory box/GGDEF domain/EAL domain protein Details for DVU1414 - Sensory box/GGDEF domain/EAL domain protein GO Terms: GO:0016021, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1414 Tuberculist Genomic Region	DVU2173 Uncharacterized protein Details for DVU2173 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2173 Tuberculist Genomic Region
DVU1503 Terminase, large subunit Details for DVU1503 - Terminase, large subunit GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU1503 Tuberculist Genomic Region	DVU2187 Uncharacterized protein Details for DVU2187 - Uncharacterized protein GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2187 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 4500 Motif 2:

e-value: 6800

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU1156 Sigma-54 dependent transcriptional regulator, putative/response regulator	up-regulates	0.12	DVU1156
DVU1754 Uncharacterized protein	up-regulates	0.32	DVU1754
DVU2097 Transcriptional regulator, putative	down-regulates	-0.15	DVU2097
DVU2785 Transcriptional regulator, GntR family	up-regulates	0.18	DVU2785
DVU2832 Transcriptional regulator cII, putative	up-regulates	0.19	DVU2832

GO Enrichment

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0008773	[protein-PII] uridylyltransferase activi...	3	0.01	1	0.0120
MF	GO:0070569	uridylyltransferase activity	3	0.01	1	0.0120
MF	GO:0004527	exonuclease activity	6	0.02	1	0.0230
MF	GO:0016779	nucleotidyltransferase activity	6	0.02	1	0.0230

Essentiality

Comments

Log in to post comments