Methanococcus maripaludis S2 Module 11 Residual: 0.26

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.26 Score: -18.1762 version: mmp_cmonkey_11_Oct_11

Members

MMP0044 conserved hypothetical protein (NCBI)

Details for MMP0044 - conserved hypothetical protein (NCBI)

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0044

Tuberculist Genomic Region

MMP1705 conserved hypothetical archeal protein (NCBI)

Details for MMP1705 - conserved hypothetical archeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1705

Tuberculist Genomic Region

MMP0093 Ribosomal protein L21e (NCBI)

Details for MMP0093 - Ribosomal protein L21e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0093

Tuberculist Genomic Region

MMP1708 SSU ribosomal protein S27E (NCBI)

Details for MMP1708 - SSU ribosomal protein S27E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1708

Tuberculist Genomic Region

MMP0150 conserved hypothetical protein (NCBI)

Details for MMP0150 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0150

Tuberculist Genomic Region

MMP1709 LSU ribosomal protein L44E (NCBI)

Details for MMP1709 - LSU ribosomal protein L44E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1709

Tuberculist Genomic Region

MMP0151 LSU ribosomal protein L40E (NCBI)

Details for MMP0151 - LSU ribosomal protein L40E (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0151

Tuberculist Genomic Region

MMP0094 Conserved hypothetical protein (NCBI)

Details for MMP0094 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0094

Tuberculist Genomic Region

MMP0258 LSU ribosomal protein L12A (NCBI)

Details for MMP0258 - LSU ribosomal protein L12A (NCBI)

GO Terms: GO:0006414, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0258

Tuberculist Genomic Region

MMP0971 Adenylosuccinate lyase (NCBI)

Details for MMP0971 - Adenylosuccinate lyase (NCBI)

GO Terms: GO:0009152, GO:0004018

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0971

Tuberculist Genomic Region

MMP0572 Peptidylprolyl isomerase, FKBP-type (NCBI)

Details for MMP0572 - Peptidylprolyl isomerase, FKBP-type (NCBI)

GO Terms: GO:0006457, GO:0003755, GO:0042027, GO:0004600, GO:0030051

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0572

Tuberculist Genomic Region

MMP0159 LSU ribosomal protein L39E (NCBI)

Details for MMP0159 - LSU ribosomal protein L39E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0159

Tuberculist Genomic Region

MMP0574 hypothetical protein (NCBI)

Details for MMP0574 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0574

Tuberculist Genomic Region

MMP0259 LSU ribosomal protein L10E (NCBI)

Details for MMP0259 - LSU ribosomal protein L10E (NCBI)

GO Terms: GO:0006414, GO:0042254, GO:0005622

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0259

Tuberculist Genomic Region

MMP0575 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit C (NCBI)

Details for MMP0575 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit C (NCBI)

GO Terms: GO:0050566, GO:0050567

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0575

Tuberculist Genomic Region

MMP0576 Dihydrodipicolinate synthase (NCBI)

Details for MMP0576 - Dihydrodipicolinate synthase (NCBI)

GO Terms: GO:0019877, GO:0008840

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0576

Tuberculist Genomic Region

MMP1472 conserved hypothetical protein (NCBI)

Details for MMP1472 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1472

Tuberculist Genomic Region

MMP0577 30S ribosomal protein S17E (NCBI)

Details for MMP0577 - 30S ribosomal protein S17E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0577

Tuberculist Genomic Region

MMP1473 conserved hypothetical protein (NCBI)

Details for MMP1473 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1473

Tuberculist Genomic Region

MMP0578 Chorismate mutase (NCBI)

Details for MMP0578 - Chorismate mutase (NCBI)

GO Terms: GO:0009073, GO:0004106

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0578

Tuberculist Genomic Region

MMP1509 conserved hypothetical protein (NCBI)

Details for MMP1509 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1509

Tuberculist Genomic Region

MMP0625 KOW motif (NCBI)

Details for MMP0625 - KOW motif (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0625

Tuberculist Genomic Region

MMP1584 SAM (and some other nucleotide) binding motif:Spermine synthase (NCBI)

Details for MMP1584 - SAM (and some other nucleotide) binding motif:Spermine synthase (NCBI)

GO Terms: GO:0004766

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1584

Tuberculist Genomic Region

Displaying 1 - 23 of 23

Motifs

Motif 1: e-value: 190 e-value: 370

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.51

MMP0568

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.28

MMP0097

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP0631

putatuve iron dependent repressor (NCBI)
 down-regulates -0.24

MMP0097

MMP0631

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.19

MMP0052

MMP0041

transcription initiation factor B (NCBI)
 down-regulates -0.15

MMP0041

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006167 AMP biosynthetic process 3 0.05 1 0.0460
BP GO:0043648 dicarboxylic acid metabolic process 3 0.05 1 0.0460
BP GO:0046033 AMP metabolic process 3 0.05 1 0.0460
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0044444 cytoplasmic part 34 1.69 7 0.0001
CC GO:0044424 intracellular part 71 3.53 9 0.0002
CC GO:0030529 ribonucleoprotein complex 36 1.79 7 0.0002
CC GO:0005622 intracellular 76 3.78 9 0.0003
CC GO:0032991 macromolecular complex 41 2.04 7 0.0005
CC GO:0005623 cell 85 4.23 9 0.0009
CC GO:0044464 cell part 85 4.23 9 0.0009
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.05 2 0.0010
MF GO:0016853 isomerase activity 14 0.13 2 0.0061
MF GO:0003723 RNA binding 57 0.52 3 0.0108
MF GO:0019843 rRNA binding 26 0.24 2 0.0206
MF GO:0003755 peptidyl-prolyl cis-trans isomerase acti... 4 0.04 1 0.0358
MF GO:0016859 cis-trans isomerase activity 4 0.04 1 0.0358
MF GO:0016866 intramolecular transferase activity 4 0.04 1 0.0358

Comments

Log in to post comments