Methanococcus maripaludis S2 Module 38 Residual: 0.47

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.47 Score: -8.98135 version: mmp_cmonkey_11_Oct_11

Members

MMP0233 Conserved hypothetical Archael protein (NCBI)

Details for MMP0233 - Conserved hypothetical Archael protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0233

Tuberculist Genomic Region

MMP0419 Sodium:neurotransmitter symporter (NCBI)

Details for MMP0419 - Sodium:neurotransmitter symporter (NCBI)

GO Terms: GO:0006836, GO:0005887, GO:0005328

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0419

Tuberculist Genomic Region

MMP0351 DegT/DnrJ/EryC1/StrS aminotransferase (NCBI)

Details for MMP0351 - DegT/DnrJ/EryC1/StrS aminotransferase (NCBI)

GO Terms: GO:0003824, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0351

Tuberculist Genomic Region

MMP0655 hypothetical protein (NCBI)

Details for MMP0655 - hypothetical protein (NCBI)

GO Terms: GO:0006790

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0655

Tuberculist Genomic Region

MMP0386 archaeal histone A (NCBI)

Details for MMP0386 - archaeal histone A (NCBI)

GO Terms: GO:0006352, GO:0005622, GO:0005634, GO:0043565, GO:0016986

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0386

Tuberculist Genomic Region

MMP0679 Na+/H+ Antiporter related protein (NCBI)

Details for MMP0679 - Na+/H+ Antiporter related protein (NCBI)

GO Terms: GO:0006814, GO:0006885, GO:0016021, GO:0015385

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0679

Tuberculist Genomic Region

MMP0689 Xanthine/uracil permease family (NCBI)

Details for MMP0689 - Xanthine/uracil permease family (NCBI)

GO Terms: GO:0006810, GO:0016020, GO:0005215

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0689

Tuberculist Genomic Region

MMP0736 conserved hypothetical archaeal protein (NCBI)

Details for MMP0736 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0736

Tuberculist Genomic Region

MMP0701 conserved hypothetical protein (NCBI)

Details for MMP0701 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0701

Tuberculist Genomic Region

MMP0737 Protein of unknown function DUF108 (NCBI)

Details for MMP0737 - Protein of unknown function DUF108 (NCBI)

GO Terms: GO:0006742, GO:0019363, GO:0033735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0737

Tuberculist Genomic Region

MMP0702 conserved hypothetical protein (NCBI)

Details for MMP0702 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006464, GO:0003824, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0702

Tuberculist Genomic Region

MMP0839 hypothetical protein (NCBI)

Details for MMP0839 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0839

Tuberculist Genomic Region

MMP0911 related to iron-sulfur flavoprotein of Methanosarcina thermophila (NCBI)

Details for MMP0911 - related to iron-sulfur flavoprotein of Methanosarcina thermophila (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0911

Tuberculist Genomic Region

MMP0840 Transcriptional regulator, TetR Family Member (NCBI)

Details for MMP0840 - Transcriptional regulator, TetR Family Member (NCBI)

GO Terms: GO:0006355, GO:0016481, GO:0003700, GO:0016566

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0840

Tuberculist Genomic Region

MMP1094 phosphoenolpyruvate synthase (NCBI)

Details for MMP1094 - phosphoenolpyruvate synthase (NCBI)

GO Terms: GO:0016310, GO:0006094, GO:0005524, GO:0008986

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1094

Tuberculist Genomic Region

MMP1103 conserved hypothetical protein (NCBI)

Details for MMP1103 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1103

Tuberculist Genomic Region

MMP1471 conserved hypothetical protein (NCBI)

Details for MMP1471 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1471

Tuberculist Genomic Region

MMP1130 conserved hypothetical protein (NCBI)

Details for MMP1130 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1130

Tuberculist Genomic Region

MMP1714 conserved hypothetical protein (NCBI)

Details for MMP1714 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1714

Tuberculist Genomic Region

MMP1270 Orotidine 5'-phosphate decarboxylase (NCBI)

Details for MMP1270 - Orotidine 5'-phosphate decarboxylase (NCBI)

GO Terms: GO:0005975, GO:0006207, GO:0004750, GO:0004590

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1270

Tuberculist Genomic Region

MMP1715 putative GTPase (NCBI)

Details for MMP1715 - putative GTPase (NCBI)

GO Terms: GO:0007264, GO:0006576, GO:0005622, GO:0003924, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1715

Tuberculist Genomic Region

MMP1541 conserved hypothetical archaeal protein (NCBI)

Details for MMP1541 - conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1541

Tuberculist Genomic Region

MMP1716 H(2)-forming methylenetetrahydromethanopterin dehydrogenase related protein (NCBI)

Details for MMP1716 - H(2)-forming methylenetetrahydromethanopterin dehydrogenase related protein (NCBI)

GO Terms: GO:0006098, GO:0015948, GO:0004616, GO:0047068, GO:0018537

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1716

Tuberculist Genomic Region

MMP1643 conserved hypothetical protein (NCBI)

Details for MMP1643 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1643

Tuberculist Genomic Region

MMP0221 Sodium/proline symporter (NCBI)

Details for MMP0221 - Sodium/proline symporter (NCBI)

GO Terms: GO:0006814, GO:0015824, GO:0016021, GO:0005298, GO:0031402

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0221

Tuberculist Genomic Region

MMP0352 Putative oxidoreductase (NCBI)

Details for MMP0352 - Putative oxidoreductase (NCBI)

GO Terms: GO:0006118, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0352

Tuberculist Genomic Region

MMP0243 conserved hypothetical protein (NCBI)

Details for MMP0243 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0243

Tuberculist Genomic Region

MMP0910 hypothetical protein (NCBI)

Details for MMP0910 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0910

Tuberculist Genomic Region

Displaying 1 - 28 of 28

Motifs

Motif 1: e-value: 3900 e-value: 6500

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0719

predicted transcriptional regluator (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.47

MMP0719

MMP1646

MMP0031

conserved hypothetical archeal protein (NCBI)

MMP1704

conserved hypothetical archeal protein (NCBI)
 up-regulates 0.37

MMP0031

MMP1704

MMP1275

hypothetical protein (NCBI)
 up-regulates 0.22

MMP1275

MMP0041

transcription initiation factor B (NCBI)

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.21

MMP0041

MMP0568

MMP1499

conserved hypothetical archaeal protein (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.17

MMP1499

MMP1646

MMP0568

transcriptional regulator related protein (NCBI)

MMP1100

putative transricptional regulator (NCBI)
 down-regulates -0.13

MMP0568

MMP1100

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0000910 cytokinesis 3 0.03 1 0.0310
BP GO:0006206 pyrimidine nucleobase metabolic process 3 0.03 1 0.0310
BP GO:0006207 'de novo' pyrimidine nucleobase biosynth... 3 0.03 1 0.0310
BP GO:0007049 cell cycle 3 0.03 1 0.0310
BP GO:0009112 nucleobase metabolic process 3 0.03 1 0.0310
BP GO:0019856 pyrimidine nucleobase biosynthetic proce... 3 0.03 1 0.0310
BP GO:0022402 cell cycle process 3 0.03 1 0.0310
BP GO:0046112 nucleobase biosynthetic process 3 0.03 1 0.0310
BP GO:0051301 cell division 3 0.03 1 0.0310
BP GO:0016043 cellular component organization 4 0.04 1 0.0410
BP GO:0022607 cellular component assembly 4 0.04 1 0.0410
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030170 pyridoxal phosphate binding 3 0.04 1 0.0380

Comments

Log in to post comments