Methanococcus maripaludis S2 Module 56 Residual: 0.13

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.13 Score: -27.4801 version: mmp_cmonkey_11_Oct_11

Members

MMP0627 Ribosomal protein L34e (NCBI)

Details for MMP0627 - Ribosomal protein L34e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0627

Tuberculist Genomic Region

MMP1547 SSU ribosomal protein S19P (NCBI)

Details for MMP1547 - SSU ribosomal protein S19P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1547

Tuberculist Genomic Region

MMP1544 LSU Ribosomal protein L4P (NCBI)

Details for MMP1544 - LSU Ribosomal protein L4P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1544

Tuberculist Genomic Region

MMP0259 LSU ribosomal protein L10E (NCBI)

Details for MMP0259 - LSU ribosomal protein L10E (NCBI)

GO Terms: GO:0006414, GO:0042254, GO:0005622

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0259

Tuberculist Genomic Region

MMP1545 LSU Ribosomal protein L23P (NCBI)

Details for MMP1545 - LSU Ribosomal protein L23P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735, GO:0003723, GO:0000166

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1545

Tuberculist Genomic Region

MMP0260 LSU ribosomal protein L1P (NCBI)

Details for MMP0260 - LSU ribosomal protein L1P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0260

Tuberculist Genomic Region

MMP1546 LSU Ribosomal protein L2P (NCBI)

Details for MMP1546 - LSU Ribosomal protein L2P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1546

Tuberculist Genomic Region

MMP0626 cytidylate kinase (NCBI)

Details for MMP0626 - cytidylate kinase (NCBI)

GO Terms: GO:0006139, GO:0005524, GO:0004127

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0626

Tuberculist Genomic Region

Displaying 1 - 8 of 8

Motifs

Motif 1: e-value: 15 e-value: 130

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0209

Conserved hypothetical protein (NCBI)
 down-regulates -0.44

MMP0209

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.37

MMP0568

MMP0700

transcriptional regulator PadR-like family (NCBI)

MMP1347

archaeal histone B (NCBI)
 down-regulates -0.34

MMP0700

MMP1347

MMP1347

archaeal histone B (NCBI)
 down-regulates -0.19

MMP1347

MMP0460

Conserved Hypothetical Protein (NCBI)
 up-regulates 0.10

MMP0460

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0015934 large ribosomal subunit 7 0.12 2 0.0038
CC GO:0005840 ribosome 32 0.53 3 0.0051
CC GO:0043226 organelle 32 0.53 3 0.0051
CC GO:0043228 non-membrane-bounded organelle 32 0.53 3 0.0051
CC GO:0043229 intracellular organelle 32 0.53 3 0.0051
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.53 3 0.0051
CC GO:0044444 cytoplasmic part 34 0.56 3 0.0062
CC GO:0044391 ribosomal subunit 9 0.15 2 0.0065
CC GO:0044422 organelle part 9 0.15 2 0.0065
CC GO:0044446 intracellular organelle part 9 0.15 2 0.0065
CC GO:0030529 ribonucleoprotein complex 36 0.60 3 0.0073
CC GO:0032991 macromolecular complex 41 0.68 3 0.0110
CC GO:0005737 cytoplasm 67 1.11 3 0.0493
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.17 3 0.0003
MF GO:0003723 RNA binding 57 0.37 3 0.0034
MF GO:0097159 organic cyclic compound binding 329 2.13 5 0.0137
MF GO:1901363 heterocyclic compound binding 329 2.13 5 0.0137
MF GO:0003676 nucleic acid binding 122 0.79 3 0.0301
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.04 1 0.0383

Comments

Log in to post comments