Methanococcus maripaludis S2 Module 79 Residual: 0.08

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Summary

Residual: 0.08 Score: -48.5323 version: mmp_cmonkey_11_Oct_11

Members

MMP0156 Ribosomal protein S19E (S16A) (NCBI)

Details for MMP0156 - Ribosomal protein S19E (S16A) (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0156

Tuberculist Genomic Region

MMP1367 SSU ribosomal protein S12 (NCBI)

Details for MMP1367 - SSU ribosomal protein S12 (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1367

Tuberculist Genomic Region

MMP0157 conserved hypothetical protein (NCBI)

Details for MMP0157 - conserved hypothetical protein (NCBI)

GO Terms: GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0157

Tuberculist Genomic Region

MMP1368 SSU ribosomal protein S7P (NCBI)

Details for MMP1368 - SSU ribosomal protein S7P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1368

Tuberculist Genomic Region

MMP1365 Ribosomal protein L30E (NCBI)

Details for MMP1365 - Ribosomal protein L30E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1365

Tuberculist Genomic Region

MMP1369 translation elongation factor EF-2 (NCBI)

Details for MMP1369 - translation elongation factor EF-2 (NCBI)

GO Terms: GO:0006414, GO:0005737, GO:0008547, GO:0003924, GO:0003746, GO:0005525

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1369

Tuberculist Genomic Region

MMP1366 KH domain:KH domain, type 1 (NCBI)

Details for MMP1366 - KH domain:KH domain, type 1 (NCBI)

GO Terms: GO:0003723

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1366

Tuberculist Genomic Region

MMP0627 Ribosomal protein L34e (NCBI)

Details for MMP0627 - Ribosomal protein L34e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0627

Tuberculist Genomic Region

Displaying 1 - 8 of 8

Motifs

Motif 1: e-value: 340 e-value: 1200

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.32

MMP0568

MMP0499

conserved hypothetical protein (NCBI)

MMP1065

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.29

MMP0499

MMP1065

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.29

MMP0052

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.19

MMP0052

MMP0257

MMP0460

Conserved Hypothetical Protein (NCBI)
 down-regulates -0.17

MMP0460

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 32 0.53 3 0.0051
CC GO:0043226 organelle 32 0.53 3 0.0051
CC GO:0043228 non-membrane-bounded organelle 32 0.53 3 0.0051
CC GO:0043229 intracellular organelle 32 0.53 3 0.0051
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.53 3 0.0051
CC GO:0044444 cytoplasmic part 34 0.56 3 0.0062
CC GO:0030529 ribonucleoprotein complex 36 0.60 3 0.0073
CC GO:0032991 macromolecular complex 41 0.68 3 0.0110
CC GO:0005737 cytoplasm 67 1.11 3 0.0493
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0003676 nucleic acid binding 122 0.79 4 0.0026
MF GO:0003723 RNA binding 57 0.37 3 0.0034
MF GO:0019843 rRNA binding 26 0.17 2 0.0102
MF GO:0097159 organic cyclic compound binding 329 2.13 5 0.0137
MF GO:1901363 heterocyclic compound binding 329 2.13 5 0.0137

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