Methanococcus maripaludis S2 Module 87 Residual: 0.23

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Summary

Residual: 0.23 Score: -17.882 version: mmp_cmonkey_11_Oct_11

Members

MMP0033 LysR family member (NCBI)

Details for MMP0033 - LysR family member (NCBI)

GO Terms: GO:0006355, GO:0005622, GO:0000166, GO:0017111, GO:0003700

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0033

Tuberculist Genomic Region

MMP1582 Pyruvoyl-dependent arginine decarboxylase, PvlArgDC, alpha and beta subunits (NCBI)

Details for MMP1582 - Pyruvoyl-dependent arginine decarboxylase, PvlArgDC, alpha and beta subunits (NCBI)

GO Terms: GO:0006527, GO:0008792

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1582

Tuberculist Genomic Region

MMP0036 Transcription factor E (NCBI)

Details for MMP0036 - Transcription factor E (NCBI)

GO Terms: GO:0006367, GO:0005673, GO:0003702

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0036

Tuberculist Genomic Region

MMP0155 conserved hypothetical protein (NCBI)

Details for MMP0155 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0155

Tuberculist Genomic Region

MMP0092 DNA-directed RNA polymerase subunit F (NCBI)

Details for MMP0092 - DNA-directed RNA polymerase subunit F (NCBI)

GO Terms: GO:0006350, GO:0003902, GO:0003900, GO:0003899, GO:0000166, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0092

Tuberculist Genomic Region

MMP0316 indolepyruvate oxidoreductase subunit alpha 1 (NCBI)

Details for MMP0316 - indolepyruvate oxidoreductase subunit alpha 1 (NCBI)

GO Terms: GO:0006118, GO:0051536, GO:0009055, GO:0030976, GO:0043805

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0316

Tuberculist Genomic Region

MMP0246 conserved hypothetical archaeal protein (NCBI)

Details for MMP0246 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0246

Tuberculist Genomic Region

MMP0384 conserved hypothetical protein (NCBI)

Details for MMP0384 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0384

Tuberculist Genomic Region

MMP0247 conserved hypothetical archaeal protein (NCBI)

Details for MMP0247 - conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0006412, GO:0004812, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0247

Tuberculist Genomic Region

MMP0398 Conserved hypothetical archaeal protein (NCBI)

Details for MMP0398 - Conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0016310, GO:0005524, GO:0016301

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0398

Tuberculist Genomic Region

MMP0248 DNA-directed RNA polymerase related protein (NCBI)

Details for MMP0248 - DNA-directed RNA polymerase related protein (NCBI)

GO Terms: GO:0006350, GO:0003677, GO:0003902, GO:0003899, GO:0003900, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0248

Tuberculist Genomic Region

MMP0412 Protein of unknown function UPF0004:Deoxyribonuclease/rho motif-related TRAM (NCBI)

Details for MMP0412 - Protein of unknown function UPF0004:Deoxyribonuclease/rho motif-related TRAM (NCBI)

GO Terms: GO:0008152, GO:0032440, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0412

Tuberculist Genomic Region

MMP0403 Conserved hypothetical Archael protein (NCBI)

Details for MMP0403 - Conserved hypothetical Archael protein (NCBI)

GO Terms: GO:0005975, GO:0030259, GO:0016758, GO:0030246

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0403

Tuberculist Genomic Region

MMP0671 conserved hypothetical protein (NCBI)

Details for MMP0671 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0671

Tuberculist Genomic Region

MMP0404 LPPG:FO 2-phospho-(S)-lactate transferase (NCBI)

Details for MMP0404 - LPPG:FO 2-phospho-(S)-lactate transferase (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0404

Tuberculist Genomic Region

MMP0878 Ribonuclease P-related protein (NCBI)

Details for MMP0878 - Ribonuclease P-related protein (NCBI)

GO Terms: GO:0008033, GO:0004526, GO:0004540

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0878

Tuberculist Genomic Region

MMP0603 translation initiation factor 1A (aIF-1A) (NCBI)

Details for MMP0603 - translation initiation factor 1A (aIF-1A) (NCBI)

GO Terms: GO:0006413, GO:0003723, GO:0003743

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0603

Tuberculist Genomic Region

MMP1425 Protein of unknown function DUF127 (NCBI)

Details for MMP1425 - Protein of unknown function DUF127 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1425

Tuberculist Genomic Region

MMP0604 Conserved Hypothetical Protein (NCBI)

Details for MMP0604 - Conserved Hypothetical Protein (NCBI)

GO Terms: GO:0006468, GO:0005524, GO:0004713, GO:0004682

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0604

Tuberculist Genomic Region

MMP1480 aconitase Family (NCBI)

Details for MMP1480 - aconitase Family (NCBI)

GO Terms: GO:0009098, GO:0051539, GO:0003861

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1480

Tuberculist Genomic Region

MMP0707 Na+/H+ exchanger (NCBI)

Details for MMP0707 - Na+/H+ exchanger (NCBI)

GO Terms: GO:0006885, GO:0016021, GO:0015299

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0707

Tuberculist Genomic Region

MMP1710 conserved hypothetical archeal protein (NCBI)

Details for MMP1710 - conserved hypothetical archeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1710

Tuberculist Genomic Region

Displaying 1 - 22 of 22

Motifs

Motif 1: e-value: 360 e-value: 3800

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0257

TATA-binding protein (TBP) (NCBI)
 down-regulates -0.41

MMP0052

MMP0257

MMP0607

Transcriptional repressor of nif and glnA operons (NCBI)

MMP1442

ArsR family transcriptional regulator (NCBI)
 up-regulates 0.34

MMP0607

MMP1442

MMP1023

Transcriptional regulator, TetR Family Member (NCBI)

MMP1303

Sensory transduction histidine kinase (NCBI)
 up-regulates 0.31

MMP1023

MMP1303

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0016070 RNA metabolic process 12 0.31 2 0.0320

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