Methanococcus maripaludis S2 Module 96 Residual: 0.31

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Summary

Residual: 0.31 Score: -13.7407 version: mmp_cmonkey_11_Oct_11

Members

MMP0075 conserved hypothetical protein (NCBI)

Details for MMP0075 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0075

Tuberculist Genomic Region

MMP1260 Conserved hypothetical Archael protein (NCBI)

Details for MMP1260 - Conserved hypothetical Archael protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1260

Tuberculist Genomic Region

MMP0245 Prefoldin beta subunit (GimC beta subunit). (NCBI)

Details for MMP0245 - Prefoldin beta subunit (GimC beta subunit). (NCBI)

GO Terms: GO:0006457, GO:0016272, GO:0051082

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0245

Tuberculist Genomic Region

MMP1515 Chaperonin GroEL (thermosome, HSP60 family) (NCBI)

Details for MMP1515 - Chaperonin GroEL (thermosome, HSP60 family) (NCBI)

GO Terms: GO:0006457, GO:0005524, GO:0051082

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1515

Tuberculist Genomic Region

MMP1113 transketoloase, C terminal half (NCBI)

Details for MMP1113 - transketoloase, C terminal half (NCBI)

GO Terms: GO:0008152, GO:0004802

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1113

Tuberculist Genomic Region

MMP0060 Ribosomal LX protein (NCBI)

Details for MMP0060 - Ribosomal LX protein (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0060

Tuberculist Genomic Region

MMP1254 AIR synthase related protein:Phosphoribosylformylglycinamidine cyclo-ligase (NCBI)

Details for MMP1254 - AIR synthase related protein:Phosphoribosylformylglycinamidine cyclo-ligase (NCBI)

GO Terms: GO:0006189, GO:0005737, GO:0004641

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1254

Tuberculist Genomic Region

MMP0668 conserved hypothetical protein (NCBI)

Details for MMP0668 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0668

Tuberculist Genomic Region

MMP1646 conserved hypothetical archaeal protein (NCBI)

Details for MMP1646 - conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0043565

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1646

Tuberculist Genomic Region

MMP1147 Ribosomal protein L37e (NCBI)

Details for MMP1147 - Ribosomal protein L37e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1147

Tuberculist Genomic Region

MMP0163 Putative arsenical pump-driving ATPase (NCBI)

Details for MMP0163 - Putative arsenical pump-driving ATPase (NCBI)

GO Terms: GO:0006820, GO:0016020, GO:0005524, GO:0042961, GO:0015446

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0163

Tuberculist Genomic Region

MMP1208 translation initiation factor aIF-2, subunit gamma (NCBI)

Details for MMP1208 - translation initiation factor aIF-2, subunit gamma (NCBI)

GO Terms: GO:0005525, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1208

Tuberculist Genomic Region

MMP0242 conserved hypothetical protein (NCBI)

Details for MMP0242 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0242

Tuberculist Genomic Region

MMP1433 Ribosomal protein L11 (NCBI)

Details for MMP1433 - Ribosomal protein L11 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1433

Tuberculist Genomic Region

MMP0317 Conserved hypothetical protein (NCBI)

Details for MMP0317 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0317

Tuberculist Genomic Region

MMP0061 Translation initiation factor IF6 (NCBI)

Details for MMP0061 - Translation initiation factor IF6 (NCBI)

GO Terms: GO:0042256, GO:0043022

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0061

Tuberculist Genomic Region

MMP0350 Bacterial transferase hexapeptide repeat (NCBI)

Details for MMP0350 - Bacterial transferase hexapeptide repeat (NCBI)

GO Terms: GO:0008415

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0350

Tuberculist Genomic Region

MMP0443 SSU ribosomal protein S24E (NCBI)

Details for MMP0443 - SSU ribosomal protein S24E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0000166, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0443

Tuberculist Genomic Region

MMP0370 hypothetical protein (NCBI)

Details for MMP0370 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0370

Tuberculist Genomic Region

MMP0578 Chorismate mutase (NCBI)

Details for MMP0578 - Chorismate mutase (NCBI)

GO Terms: GO:0009073, GO:0004106

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0578

Tuberculist Genomic Region

MMP0572 Peptidylprolyl isomerase, FKBP-type (NCBI)

Details for MMP0572 - Peptidylprolyl isomerase, FKBP-type (NCBI)

GO Terms: GO:0006457, GO:0003755, GO:0042027, GO:0004600, GO:0030051

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0572

Tuberculist Genomic Region

MMP1401 translation elongation factor aEF-1 beta (NCBI)

Details for MMP1401 - translation elongation factor aEF-1 beta (NCBI)

GO Terms: GO:0006414, GO:0005853, GO:0003746, GO:0008547, GO:0003924

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1401

Tuberculist Genomic Region

MMP0657 conserved hypothetical protein (NCBI)

Details for MMP0657 - conserved hypothetical protein (NCBI)

GO Terms: GO:0008152, GO:0016597

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0657

Tuberculist Genomic Region

MMP0062 Ribosomal protein L31e (NCBI)

Details for MMP0062 - Ribosomal protein L31e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0062

Tuberculist Genomic Region

MMP0946 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit B (NCBI)

Details for MMP0946 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit B (NCBI)

GO Terms: GO:0006412, GO:0050567, GO:0050566

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0946

Tuberculist Genomic Region

MMP1403 LSU ribosomal protein L22P (NCBI)

Details for MMP1403 - LSU ribosomal protein L22P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1403

Tuberculist Genomic Region

MMP1013 Carbamoyl-phosphate synthase large chain (NCBI)

Details for MMP1013 - Carbamoyl-phosphate synthase large chain (NCBI)

GO Terms: GO:0019856, GO:0006526, GO:0005737, GO:0005524, GO:0004088

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1013

Tuberculist Genomic Region

Displaying 1 - 27 of 27

Motifs

Motif 1: e-value: 170 e-value: 16000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)
 down-regulates -0.46

MMP0052

MMP1447

Cro repressor family Helix-turn-helix motif containing protein (NCBI)
 down-regulates -0.38

MMP1447

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP1052

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.25

MMP0097

MMP1052

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 down-regulates -0.20

MMP1015

MMP0460

Conserved Hypothetical Protein (NCBI)
 up-regulates 0.12

MMP0460

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0022613 ribonucleoprotein complex biogenesis 3 0.05 1 0.0460
BP GO:0042254 ribosome biogenesis 3 0.05 1 0.0460
BP GO:0043648 dicarboxylic acid metabolic process 3 0.05 1 0.0460
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0044444 cytoplasmic part 34 0.94 3 0.0470
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.11 2 0.0044
MF GO:0019843 rRNA binding 26 0.47 3 0.0096
MF GO:0097159 organic cyclic compound binding 329 5.96 10 0.0271
MF GO:1901363 heterocyclic compound binding 329 5.96 10 0.0271

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