Methanococcus maripaludis S2 Module 118 Residual: 0.10

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Summary

Residual: 0.10 Score: -25.0603 version: mmp_cmonkey_11_Oct_11

Members

MMP1321 SSU ribosomal protein S11 (NCBI)

Details for MMP1321 - SSU ribosomal protein S11 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1321

Tuberculist Genomic Region

MMP1323 LSU Ribosomal protein L18E (NCBI)

Details for MMP1323 - LSU Ribosomal protein L18E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1323

Tuberculist Genomic Region

MMP1319 SSU ribosomal protein S13 (NCBI)

Details for MMP1319 - SSU ribosomal protein S13 (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003723, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1319

Tuberculist Genomic Region

MMP1324 LSU ribosomal protein L13P (NCBI)

Details for MMP1324 - LSU ribosomal protein L13P (NCBI)

GO Terms: GO:0006412, GO:0015934, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1324

Tuberculist Genomic Region

MMP1320 SSU ribosomal protein S4P (S9E) (NCBI)

Details for MMP1320 - SSU ribosomal protein S4P (S9E) (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735, GO:0019843

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1320

Tuberculist Genomic Region

MMP1325 SSU ribosomal protein S9P (NCBI)

Details for MMP1325 - SSU ribosomal protein S9P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1325

Tuberculist Genomic Region

MMP1322 DNA-directed RNA polymerase, subunit D (NCBI)

Details for MMP1322 - DNA-directed RNA polymerase, subunit D (NCBI)

GO Terms: GO:0006350, GO:0003902, GO:0003901, GO:0003677, GO:0003900, GO:0046983, GO:0003899

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1322

Tuberculist Genomic Region

MMP1326 DNA-directed RNA polymerase, subunit N (NCBI)

Details for MMP1326 - DNA-directed RNA polymerase, subunit N (NCBI)

GO Terms: GO:0045449, GO:0003902, GO:0003900, GO:0003677, GO:0003899, GO:0003901

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1326

Tuberculist Genomic Region

Displaying 1 - 8 of 8

Motifs

Motif 1:

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0033

LysR family member (NCBI)
 up-regulates 0.64

MMP0033

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.52

MMP0052

MMP0097

MMP0020

conserved hypothetical protein (NCBI)

MMP1447

Cro repressor family Helix-turn-helix motif containing protein (NCBI)
 down-regulates -0.12

MMP0020

MMP1447

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 32 0.53 3 0.0051
CC GO:0043226 organelle 32 0.53 3 0.0051
CC GO:0043228 non-membrane-bounded organelle 32 0.53 3 0.0051
CC GO:0043229 intracellular organelle 32 0.53 3 0.0051
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.53 3 0.0051
CC GO:0044444 cytoplasmic part 34 0.56 3 0.0062
CC GO:0030529 ribonucleoprotein complex 36 0.60 3 0.0073
CC GO:0032991 macromolecular complex 41 0.68 3 0.0110
CC GO:0005737 cytoplasm 67 1.11 3 0.0493
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.17 3 0.0003
MF GO:0003676 nucleic acid binding 122 0.79 4 0.0026
MF GO:0003723 RNA binding 57 0.37 3 0.0034
MF GO:0003899 DNA-directed RNA polymerase activity 5 0.03 1 0.0320
MF GO:0034062 RNA polymerase activity 5 0.03 1 0.0320
MF GO:0016779 nucleotidyltransferase activity 7 0.05 1 0.0446

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