Methanococcus maripaludis S2 Module 128 Residual: 0.10

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Summary

Residual: 0.10 Score: -31.3057 version: mmp_cmonkey_11_Oct_11

Members

MMP0062 Ribosomal protein L31e (NCBI)

Details for MMP0062 - Ribosomal protein L31e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0062

Tuberculist Genomic Region

MMP1544 LSU Ribosomal protein L4P (NCBI)

Details for MMP1544 - LSU Ribosomal protein L4P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1544

Tuberculist Genomic Region

MMP0298 LSU ribosomal protein L15E (NCBI)

Details for MMP0298 - LSU ribosomal protein L15E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0298

Tuberculist Genomic Region

MMP1545 LSU Ribosomal protein L23P (NCBI)

Details for MMP1545 - LSU Ribosomal protein L23P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735, GO:0003723, GO:0000166

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1545

Tuberculist Genomic Region

MMP1207 Ribosomal protein S6e (NCBI)

Details for MMP1207 - Ribosomal protein S6e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1207

Tuberculist Genomic Region

MMP1546 LSU Ribosomal protein L2P (NCBI)

Details for MMP1546 - LSU Ribosomal protein L2P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1546

Tuberculist Genomic Region

MMP1543 LSU Ribosomal protein L3P (NCBI)

Details for MMP1543 - LSU Ribosomal protein L3P (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1543

Tuberculist Genomic Region

MMP1547 SSU ribosomal protein S19P (NCBI)

Details for MMP1547 - SSU ribosomal protein S19P (NCBI)

GO Terms: GO:0006412, GO:0015935, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1547

Tuberculist Genomic Region

Displaying 1 - 8 of 8

Motifs

Motif 1: e-value: 10 e-value: 21

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0993

conserved hypothetical helix-turn-helix protein (NCBI)

MMP1646

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.41

MMP0993

MMP1646

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.40

MMP0568

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.36

MMP0052

MMP0097

MMP0460

Conserved Hypothetical Protein (NCBI)
 down-regulates -0.10

MMP0460

GO Enrichment

Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005840 ribosome 32 0.71 4 0.0008
CC GO:0043226 organelle 32 0.71 4 0.0008
CC GO:0043228 non-membrane-bounded organelle 32 0.71 4 0.0008
CC GO:0043229 intracellular organelle 32 0.71 4 0.0008
CC GO:0043232 intracellular non-membrane-bounded organ... 32 0.71 4 0.0008
CC GO:0044444 cytoplasmic part 34 0.75 4 0.0011
CC GO:0030529 ribonucleoprotein complex 36 0.80 4 0.0014
CC GO:0032991 macromolecular complex 41 0.91 4 0.0023
CC GO:0005737 cytoplasm 67 1.48 4 0.0177
CC GO:0044424 intracellular part 71 1.57 4 0.0225
CC GO:0005622 intracellular 76 1.68 4 0.0297
CC GO:0005623 cell 85 1.88 4 0.0468
CC GO:0044464 cell part 85 1.88 4 0.0468
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.13 3 0.0001
MF GO:0003723 RNA binding 57 0.29 3 0.0015
MF GO:0003676 nucleic acid binding 122 0.63 3 0.0136
MF GO:0097159 organic cyclic compound binding 329 1.70 4 0.0325
MF GO:1901363 heterocyclic compound binding 329 1.70 4 0.0325

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