Methanococcus maripaludis S2 Module 138 Residual: 0.22

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Summary

Residual: 0.22 Score: -20.4448 version: mmp_cmonkey_11_Oct_11

Members

MMP0060 Ribosomal LX protein (NCBI)

Details for MMP0060 - Ribosomal LX protein (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0060

Tuberculist Genomic Region

MMP0575 Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit C (NCBI)

Details for MMP0575 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit C (NCBI)

GO Terms: GO:0050566, GO:0050567

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0575

Tuberculist Genomic Region

MMP0061 Translation initiation factor IF6 (NCBI)

Details for MMP0061 - Translation initiation factor IF6 (NCBI)

GO Terms: GO:0042256, GO:0043022

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0061

Tuberculist Genomic Region

MMP0576 Dihydrodipicolinate synthase (NCBI)

Details for MMP0576 - Dihydrodipicolinate synthase (NCBI)

GO Terms: GO:0019877, GO:0008840

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0576

Tuberculist Genomic Region

MMP0062 Ribosomal protein L31e (NCBI)

Details for MMP0062 - Ribosomal protein L31e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0062

Tuberculist Genomic Region

MMP0577 30S ribosomal protein S17E (NCBI)

Details for MMP0577 - 30S ribosomal protein S17E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0577

Tuberculist Genomic Region

MMP0150 conserved hypothetical protein (NCBI)

Details for MMP0150 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0150

Tuberculist Genomic Region

MMP0578 Chorismate mutase (NCBI)

Details for MMP0578 - Chorismate mutase (NCBI)

GO Terms: GO:0009073, GO:0004106

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0578

Tuberculist Genomic Region

MMP0151 LSU ribosomal protein L40E (NCBI)

Details for MMP0151 - LSU ribosomal protein L40E (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0151

Tuberculist Genomic Region

MMP1147 Ribosomal protein L37e (NCBI)

Details for MMP1147 - Ribosomal protein L37e (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1147

Tuberculist Genomic Region

MMP0245 Prefoldin beta subunit (GimC beta subunit). (NCBI)

Details for MMP0245 - Prefoldin beta subunit (GimC beta subunit). (NCBI)

GO Terms: GO:0006457, GO:0016272, GO:0051082

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0245

Tuberculist Genomic Region

MMP1579 Probable SSU ribosomal protein S15P/S13E (NCBI)

Details for MMP1579 - Probable SSU ribosomal protein S15P/S13E (NCBI)

GO Terms: GO:0006412, GO:0005840, GO:0003735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1579

Tuberculist Genomic Region

MMP0574 hypothetical protein (NCBI)

Details for MMP0574 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0574

Tuberculist Genomic Region

Displaying 1 - 13 of 13

Motifs

Motif 1: e-value: 120 e-value: 4000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0568

transcriptional regulator related protein (NCBI)
 up-regulates 0.75

MMP0568

MMP0052

Conserved Hypothetical protein with 2 CBS domains (NCBI)

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)
 down-regulates -0.62

MMP0052

MMP0097

MMP0460

Conserved Hypothetical Protein (NCBI)
 up-regulates 0.28

MMP0460

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP0527

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.27

MMP0097

MMP0527

MMP1065

conserved hypothetical archaeal protein (NCBI)
 down-regulates -0.12

MMP1065

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0022613 ribonucleoprotein complex biogenesis 3 0.03 1 0.0310
BP GO:0042254 ribosome biogenesis 3 0.03 1 0.0310
BP GO:0043648 dicarboxylic acid metabolic process 3 0.03 1 0.0310
BP GO:0016043 cellular component organization 4 0.04 1 0.0410
BP GO:0022607 cellular component assembly 4 0.04 1 0.0410
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005737 cytoplasm 67 2.22 6 0.0022
CC GO:0044424 intracellular part 71 2.35 6 0.0032
CC GO:0005622 intracellular 76 2.52 6 0.0049
CC GO:0005840 ribosome 32 1.06 4 0.0095
CC GO:0043226 organelle 32 1.06 4 0.0095
CC GO:0043228 non-membrane-bounded organelle 32 1.06 4 0.0095
CC GO:0043229 intracellular organelle 32 1.06 4 0.0095
CC GO:0043232 intracellular non-membrane-bounded organ... 32 1.06 4 0.0095
CC GO:0005623 cell 85 2.82 6 0.0097
CC GO:0044464 cell part 85 2.82 6 0.0097
CC GO:0044444 cytoplasmic part 34 1.13 4 0.0120
CC GO:0030529 ribonucleoprotein complex 36 1.19 4 0.0150
CC GO:0032991 macromolecular complex 41 1.36 4 0.0244
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0019843 rRNA binding 26 0.13 2 0.0063
MF GO:0003723 RNA binding 57 0.29 2 0.0291
MF GO:0070180 large ribosomal subunit rRNA binding 6 0.03 1 0.0307

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