Methanococcus maripaludis S2 Module 160 Residual: 0.33

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Summary

Residual: 0.33 Score: -16.0331 version: mmp_cmonkey_11_Oct_11

Members

MMP0238 conserved hypothetical archaeal protein (NCBI)

Details for MMP0238 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0238

Tuberculist Genomic Region

MMP0452 hypothetical protein (NCBI)

Details for MMP0452 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0452

Tuberculist Genomic Region

MMP0038 conserved hypothetical protein (NCBI)

Details for MMP0038 - conserved hypothetical protein (NCBI)

GO Terms: GO:0009306, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0038

Tuberculist Genomic Region

MMP0458 possible A. fulgidus predicted coding region AF1474 (NCBI)

Details for MMP0458 - possible A. fulgidus predicted coding region AF1474 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0458

Tuberculist Genomic Region

MMP0039 conserved hypothetical protein (NCBI)

Details for MMP0039 - conserved hypothetical protein (NCBI)

GO Terms: GO:0009306, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0039

Tuberculist Genomic Region

MMP0595 conserved hypothetical protein (NCBI)

Details for MMP0595 - conserved hypothetical protein (NCBI)

GO Terms: GO:0003824, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0595

Tuberculist Genomic Region

MMP0040 type II secretion system protein; putative; subunit 1 (NCBI)

Details for MMP0040 - type II secretion system protein; putative; subunit 1 (NCBI)

GO Terms: GO:0006810, GO:0005622, GO:0005524, GO:0017111

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0040

Tuberculist Genomic Region

MMP0636 conserved hypothetical protein (NCBI)

Details for MMP0636 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0636

Tuberculist Genomic Region

MMP0041 transcription initiation factor B (NCBI)

Details for MMP0041 - transcription initiation factor B (NCBI)

GO Terms: GO:0006355, GO:0006352, GO:0005667, GO:0003700, GO:0005515, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0041

Tuberculist Genomic Region

MMP0656 conserved hypothetical protein (NCBI)

Details for MMP0656 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0656

Tuberculist Genomic Region

MMP0086 LuxR family member (NCBI)

Details for MMP0086 - LuxR family member (NCBI)

GO Terms: GO:0006352, GO:0006355, GO:0005622, GO:0003700, GO:0043565, GO:0003677, GO:0016987

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0086

Tuberculist Genomic Region

MMP0721 ferredoxin (NCBI)

Details for MMP0721 - ferredoxin (NCBI)

GO Terms: GO:0006118, GO:0009055, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0721

Tuberculist Genomic Region

MMP0234 conserved hypothetical protein (NCBI)

Details for MMP0234 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0234

Tuberculist Genomic Region

MMP0722 Conserved Hypothetical Archael Protein (NCBI)

Details for MMP0722 - Conserved Hypothetical Archael Protein (NCBI)

GO Terms: GO:0006118, GO:0009055, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0722

Tuberculist Genomic Region

MMP0235 conserved hypothetical protein (NCBI)

Details for MMP0235 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0235

Tuberculist Genomic Region

MMP0723 conserved hypothetical protein (NCBI)

Details for MMP0723 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0723

Tuberculist Genomic Region

MMP0237 Conserved hypothetical protein (NCBI)

Details for MMP0237 - Conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0237

Tuberculist Genomic Region

MMP0783 conserved hypothetical protein (NCBI)

Details for MMP0783 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0783

Tuberculist Genomic Region

MMP0240 conserved hypothetical archaeal protein (NCBI)

Details for MMP0240 - conserved hypothetical archaeal protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0240

Tuberculist Genomic Region

MMP1279 Camphor resistance CrcB protein (NCBI)

Details for MMP1279 - Camphor resistance CrcB protein (NCBI)

GO Terms: GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1279

Tuberculist Genomic Region

MMP0299 hypothetical protein (NCBI)

Details for MMP0299 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0299

Tuberculist Genomic Region

MMP1608 conserved hypothetical protein (NCBI)

Details for MMP1608 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006118, GO:0046914, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1608

Tuberculist Genomic Region

Displaying 1 - 22 of 22

Motifs

Motif 1: e-value: 0.87 e-value: 320

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP0480

conserved hypothetical protein (NCBI)

MMP0719

predicted transcriptional regluator (NCBI)
 up-regulates 0.25

MMP0480

MMP0719

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

Formate

 up-regulates 0.19

MMP0097

Formate

MMP0097

Transcriptional regulator protein, Helix-turn-helix motif (NCBI)

MMP1015

Transcription factor CBF/NF-Y/archaeal histone:Histone-fold/TFIID-TAF/NF-Y domain (NCBI)
 up-regulates 0.17

MMP0097

MMP1015

MMP0018

Transcriptional regulator, LysR Family Member (NCBI)

MMP0480

conserved hypothetical protein (NCBI)
 up-regulates 0.11

MMP0018

MMP0480

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006351 transcription, DNA-templated 6 0.03 1 0.0310
BP GO:0032774 RNA biosynthetic process 6 0.03 1 0.0310
BP GO:0097659 nucleic acid-templated transcription 6 0.03 1 0.0310
BP GO:0010467 gene expression 7 0.04 1 0.0360
BP GO:0009059 macromolecule biosynthetic process 8 0.04 1 0.0420
BP GO:0034645 cellular macromolecule biosynthetic proc... 8 0.04 1 0.0420
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0030170 pyridoxal phosphate binding 3 0.03 1 0.0270

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