CD630_11770 fapR

Displaying 11 - 20 of 28

Below is a list of putative TF-module interactions that were predicted by using the algorithm, inferelator. Only the interactions with confidence scores in the top 10% of the non-zero scores were included.

1. Betas: correspond to the average coefficients of the Bayesian regressions between module expression and TF expression profiles. The values indicate the magnitude and direction (activation or repression for positive or negative values, respectively) of each TF-module interaction. 2. Confidence scores: indicate the likelihood of the TF-module interactions.

* Given that translation start was used to define the 3' end of putative promoters, some cis-regulatory motifs are likely to be ribosome binding sites (i.e., Shine-Dalgarno sequence). RBS is typically a six nucleotide sequence 5'-GGAGGA-3'.

Default Filter: > 0.1 (Absolute Beta)
TF Module Beta Confidence Score
CD630_11770 151 0.15 0.28
CD630_11770 153 0.24 0.48
CD630_11770 157 0.32 0.52
CD630_11770 182 -0.29 0.48
CD630_11770 212 0.13 0.27
CD630_11770 269 0.15 0.36
CD630_11770 284 -0.21 0.41
CD630_11770 317 0.10 0.23
CD630_11770 327 0.33 0.47
CD630_11770 342 0.23 0.41
Default filter: <= 0.05
Default filter: >4
CD630_11770 is not predicted to regulate any modules via hypergeometric test by using default filters

Functional

%1 doesn't have any functional assignment.