Cre04.g217550.t1.1 eukaryotic translation initiation factor 3C

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre04.g217550.t1.1 chromosome_4 eukaryotic translation initiation factor 3C CDS 245151 257595 + 12 444

Phytozome

Locus Genomic View Functional Annotation
Cre04.g217550.t1.1 Cre04.g217550.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
EIF3C g4529.t1 JGI140639 30791382 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0168
motif_0168_1

motif_0168_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.9
Motif Bicluster: 
bicluster_0168
Width: 
11
Number of Sites: 
1
Consensus: 
AATTcAtTTgT
motif_0168_2

motif_0168_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
67
Motif Bicluster: 
bicluster_0168
Width: 
24
Number of Sites: 
1
Consensus: 
cATCActctgtTaaGCAtTTTGcA
 0.19
bicluster_0171
motif_0171_1

motif_0171_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1500
Motif Bicluster: 
bicluster_0171
Width: 
21
Number of Sites: 
1
Consensus: 
CAnACTtgTAnTtcAaTnAAT
motif_0171_2

motif_0171_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2900
Motif Bicluster: 
bicluster_0171
Width: 
21
Number of Sites: 
1
Consensus: 
aGAgAAcAaaAtctAAgngAA
 0.17

GO Terms

GO:0005515 GO:0003743 GO:0031369 GO:0006413 GO:0005852 -

protein binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

translation initiation factor activity

GO Category: 
molecular_function
Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.

translation initiation factor binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a translation initiation factor, any polypeptide factor involved in the initiation of ribosome-mediated translation.

translational initiation

GO Category: 
biological_process
Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.

eukaryotic translation initiation factor 3 complex

GO Category: 
cellular_component
Details: 
A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI140639

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