Cre06.g292450.t1.2 Pseudouridine synthase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g292450.t1.2 chromosome_6 Pseudouridine synthase family protein CDS 6424601 6428166 - 3 565

Phytozome

Locus Genomic View Functional Annotation
Cre06.g292450.t1.2 Cre06.g292450.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PUS13 g6776.t1, Cre06.g292450.t1.1 Not available 30779359 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0016
motif_0016_1

motif_0016_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000005
Motif Bicluster: 
bicluster_0016
Width: 
11
Number of Sites: 
1
Consensus: 
tGGTGgTGGTG
motif_0016_2

motif_0016_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00017
Motif Bicluster: 
bicluster_0016
Width: 
20
Number of Sites: 
1
Consensus: 
tATTcAntTagTTtacTnTA
 0.11
bicluster_0031
motif_0031_1

motif_0031_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.9e-16
Motif Bicluster: 
bicluster_0031
Width: 
24
Number of Sites: 
1
Consensus: 
CTCCgcCTcCtcCTcccCcTcCTc
motif_0031_2

motif_0031_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000012
Motif Bicluster: 
bicluster_0031
Width: 
24
Number of Sites: 
1
Consensus: 
GcTGcTGctGgnGnnGctGtCGcg
 0.14

GO Terms

GO:0003723 GO:0009982 GO:0001522 GO:0009451 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

pseudouridine synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.

pseudouridine synthesis

GO Category: 
biological_process
Details: 
The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

RNA modification

GO Category: 
biological_process
Details: 
The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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