Cre08.g370850.t1.1 RUB1 conjugating enzyme 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre08.g370850.t1.1 chromosome_8 RUB1 conjugating enzyme 1 CDS 2370260 2373856 - 3 596

Phytozome

Locus Genomic View Functional Annotation
Cre08.g370850.t1.1 Cre08.g370850.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
UBC18 g8689.t1 JGI297279 30773578 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0051
motif_0051_1

motif_0051_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0052
Motif Bicluster: 
bicluster_0051
Width: 
21
Number of Sites: 
1
Consensus: 
CAGCanCaccAGCAgCAGCAc
motif_0051_2

motif_0051_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.33
Motif Bicluster: 
bicluster_0051
Width: 
15
Number of Sites: 
1
Consensus: 
tAtaAcaTtTGAtAA
 0.21
bicluster_0183
motif_0183_1

motif_0183_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
5.5e-31
Motif Bicluster: 
bicluster_0183
Width: 
24
Number of Sites: 
1
Consensus: 
GtGTgcGTGTGTGtGtGTGTGtGt
motif_0183_2

motif_0183_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.7e-18
Motif Bicluster: 
bicluster_0183
Width: 
24
Number of Sites: 
1
Consensus: 
TGcGTgtGTGTGTGTGTgtgcGtG
 0.25

GO Terms

GO:0016881 -

acid-amino acid ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI297279

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