Cre10.g417650.t1.1 AGAMOUS-like 26

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre10.g417650.t1.1 chromosome_10 AGAMOUS-like 26 CDS 28013 32092 + 4 079

Phytozome

Locus Genomic View Functional Annotation
Cre10.g417650.t1.1 Cre10.g417650.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g10340.t1 JGI281393 30789778 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0010
motif_0010_1

motif_0010_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000000071
Motif Bicluster: 
bicluster_0010
Width: 
24
Number of Sites: 
1
Consensus: 
CCgCCaCCGCCnCCGCCgCcgCCt
motif_0010_2

motif_0010_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00027
Motif Bicluster: 
bicluster_0010
Width: 
23
Number of Sites: 
1
Consensus: 
tCaGctGCTGCTGcaGtTGCTgt
 0.23
bicluster_0022
motif_0022_1

motif_0022_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.64
Motif Bicluster: 
bicluster_0022
Width: 
21
Number of Sites: 
1
Consensus: 
CcAcctgCaCCacCagCaCCt
motif_0022_2

motif_0022_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0022
Width: 
0
Number of Sites: 
1
 0.28

GO Terms

GO:0003723 GO:0008173 GO:0006396 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

RNA methyltransferase activity

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.

RNA processing

GO Category: 
biological_process
Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI281393

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