Cre12.g494450.t1.2 small subunit ribosomal protein 16

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g494450.t1.2 chromosome_12 small subunit ribosomal protein 16 CDS 343330 344322 + 992
Locus Genomic View Functional Annotation
Cre12.g494450.t1.2 Cre12.g494450.t1.2

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Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g12059.t1, Cre12.g494450.t1.1 JGI195629 30791769 Search
Motif 1 Motif 2 Residual
bicluster_0038

motif_0038_1

e.value: 
0.00072
Motif Bicluster: 
Width: 
21
Number of Sites: 
1
Consensus: 
TTtGgTTTaGTtTGGGCTGGT

motif_0038_2

e.value: 
0.00032
Motif Bicluster: 
Width: 
18
Number of Sites: 
1
Consensus: 
CgCtGCcGCtGCcGCcGC
0.17
bicluster_0090

motif_0090_1

e.value: 
730
Motif Bicluster: 
Width: 
11
Number of Sites: 
1
Consensus: 
aTttGCAaTTT

motif_0090_2

e.value: 
890
Motif Bicluster: 
Width: 
18
Number of Sites: 
1
Consensus: 
TACACACACggATGCACa
0.10
GO:0003735 GO:0006412 GO:0005622 GO:0005840 -

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

intracellular

GO Category: 
cellular_component
Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences
Link to STRING STRING Network
JGI195629
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