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[+] Show/hide bicluster #123 rows and columns.
bicluster 123
Phaeodactylum tricornutum
22x75
[+] Show/hide bicluster #123 rows (genes).
bicluster 123 genes
Phaeodactylum tricornutum
22
[+] Show/hide bicluster #123 rows (short gene names).
bicluster 123 short names
Phaeodactylum tricornutum
22
short_name
[+] Show/hide bicluster #123 rows (long gene names).
bicluster 123 long names
Phaeodactylum tricornutum
22
long_name
[+] Show/hide bicluster #123 rows (NCBI RefSeq gene IDs).
bicluster 123 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #123 gene upstream sequences.
bicluster 123 upstream sequences
Phaeodactylum tricornutum
22
upstream
[+] Show/hide bicluster #123 columns (arrays; conditions).
bicluster 123 arrays
Phaeodactylum tricornutum
75
[+] Show/hide bicluster #123 ratios.
bicluster 123 ratios
Phaeodactylum tricornutum
22x75
GENES GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_1 GSE31131_Cadmium_1.2mg_1 GSE31131_Cadmium_1.2mg_2 GSE31131_Cadmium_1.2mg_3 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Ammonia_5 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_2 GSE34988_Control_3 GSE34988_Control_6 GSE34988_Copper_3 GSE34988_Copper_5 GSE34988_Dispersed_oil_3 GSE34988_Dispersed_oil_5 GSE34988_Mixture_2 GSE34988_Oil_1 GSE34988_Oil_2 GSE34988_Oil_3 GSE34988_Oil_5 GSE34988_Salinity_15ppt_3 GSE34988_Salinity_15ppt_5 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_6h_2 GSE42514_dark_8hr_light_3hr_1 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_2 GSE42514_light_16hr_dark_4hr_2 GSE42514_light_6hr_1 GSE42514_light_6hr_2 GSE55959_BlueLight_24h_rep1 GSE55959_BlueLight_24h_rep2 GSE55959_BlueLight_24h_rep3 GSE55959_BlueLight_6h_rep1 GSE55959_BlueLight_6h_rep3 GSE55959_GreenLight_24h_rep2 GSE55959_GreenLight_24h_rep3 GSE55959_GreenLight_6h_rep2 GSE55959_RedLight_24h_rep1 GSE55959_RedLight_24h_rep2 GSE55959_RedLight_24h_rep3
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43701 -0.0388447559335385 NA -0.104583841224507 0.0491986618668661 0.753669265055024 1.38823926407085 1.13681074107764 0.518646165578624 -0.0931675447163882 -0.0362093229607131 0.882676350377363 1.11484684311703 0.439735784984714 1.07274448072488 0.373415613136263 0.735420799325593 -0.24659787413656 -0.114239269376618 0 0.00307565006182747 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.19753470683533 -4.04909545870489 -4.0372933387258 0.282093377127959 0.196430572928338 0.086742034487446 -0.356697420472743 0.845173249537315 1.01065751089061 -1.94912499013708 -1.02774296717318 0.337929772353466 -0.131633602504364 -1.07181979590418 0.00246538470475536 -0.54222800254634 0.0639253133933922 -0.102720526139607 -0.141173304872431 0.0970125169223651 -0.373224818244144 -0.0730275663377006 -0.0516534201998311 -0.374576991859483 -0.493646911531111 -0.218332720598157
46595 -0.516847956064687 -0.596377213149857 -0.524050605762967 0.0971779307136429 0.407951257466118 0.497873337845097 0.487246428436094 0.854032361008856 0.652478213618667 0.999868010774771 0.813691520490409 0.38691351813906 -0.0384119498564693 0.221552685482726 0.67245581294326 0.468924688266095 -0.205324353301975 0.437368079275508 -0.133576958994988 0.0996478393393446 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.35545205983505 -4.37124370346781 -4.42887537507827 0.395831123515564 0.410984107824419 0.0708050038677 -0.119544477556838 1.15904054879281 1.07243187494326 -1.67602414883754 -0.704668634426999 -0.149805775731255 -0.684915660027739 -0.717314302662623 0.173838582473527 0.162685140157235 -0.28134295235914 -0.254586804788579 0 0.0783388375988142 0.268171299370811 -0.271638922068895 0.325952680866085 -0.314651555701286 0.0546929341348962 -0.533313463729046
49098 -0.110341137363001 -0.434134175616496 -0.499323788975352 0.0916927883359342 0.327083862060602 0.686421402308729 0.685518984107274 0.820547684901741 0.0714382138381971 0.699262678626154 0.40076159408449 0.0128914759563213 0.29939713288282 0.541010851519015 0.595269082604721 0.639948211826622 -0.410897580375442 -0.340807970871967 -0.138119455253767 -0.369327079823629 2.17519844852508 1.96295768808626 1.61906669203423 2.2990768430845 -0.109904724553546 0.0628140825671532 0.103748180293693 0.213349273717256 -0.237556272383897 -0.081112215212271 -0.0237074980701012 0.0168650260047009 0.618264164470655 0.522459321324511 0.4438095667146 0 1.95935000868184 0.615534362880181 0.382448857215019 0.167293959431922 0.689176003563583 0.0395189527102533 0.0854078427614966 -0.253453513861444 -0.484736981967013 -0.488365398133568 -1.19136930503377 -0.995147976190766 -0.872222373624935 -4.81895317382961 -4.81071361041395 -4.9271842050608 0.189290543014255 0.225823600459934 -0.42804022472773 -1.17519544543078 0.56804940823189 0.876323043591328 -1.84821629870467 -1.03032367708869 -0.206486071088887 -0.252814944325327 -1.50153719345098 -0.779152021289552 -0.268027648314807 -0.348861228542917 -0.336236026983504 -0.513162350250281 -0.418733230444265 -0.0749018555017453 -0.176238626240397 -0.301246873510949 -0.169525406885024 -0.238571644314494 -0.205617472283664
52316 -0.25979770036972 -0.699749813620067 -0.794206391248744 -0.0964004998073618 0.76231914492886 1.09861625812508 1.49586639104611 0.962893566934398 0.305028861221169 0.957227757118583 1.27479362382163 0.723545987685813 0.501400282490612 1.14740878590115 0.982620622425508 1.3409132281617 -0.291369335989534 -0.306773999320922 -0.371609881716713 -0.436556703045961 2.46369936871548 2.24097234350897 2.00390352919568 2.08684512098414 -0.196210005121264 -0.0715606201798668 0.169001914722676 0.185082719156643 -0.0468512279824645 0.000504003498902407 -0.100832356997565 -0.036590822013557 0.389880641828337 0.426647468459823 -0.126466101897578 -0.136649356970055 2.00639291962035 0.317822737879252 0.147783139994071 0.00837248999007623 0.328984597170063 -0.511474617982362 -0.054538990196512 -0.833255775870484 -0.192201012807156 -1.16989738615193 -1.68619117555522 -1.67181753112612 -1.87274917649739 -3.97126662785691 -3.95058228884491 -3.9706704235255 0.335670575788754 0.310051478899724 -0.260547887230678 -0.419443537832765 0.96983153198401 1.15484982508742 -1.3286166620273 -0.362985388796399 0.599329629813182 0.0424671764532567 -0.763589886302709 0.0130860233198824 0.200004903767892 0.159437566748026 0.156829491821419 -0.183056916288537 0.170479872005292 0.0293733378611259 0.0817252406150023 -0.0698591956334075 0.0020393758163637 -0.073185291902493 -0.0261722250137426
54080 -0.0941954998690571 -0.651506982361096 0.128677201928271 -0.226777514558737 0.387614287369172 0.464903634445314 0.845821362520669 0.767234735457348 0.156672504051591 0.56487981393724 0.606172235929143 0.805151634922611 0.0556429332100757 0.23175128602958 0.706236630460197 0.523927279301978 0.390400844781632 0 -0.0810021623994481 -0.173163527248609 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.85190611761195 -4.71424075675785 -4.78355058844566 0.46033234554688 0.579427383728243 -0.202336532814926 -0.0766819175324307 1.02875334450805 0.576883846330451 -1.09337821516818 -0.480126415994419 0.356983366687507 -0.122902526887785 -0.700506948687929 -0.163148326043284 0.454025282612652 -0.0862890585969319 -0.0476478129766423 -0.340693359696601 -0.0459827066353626 0.468831740566346 -0.203166016639445 -0.218692228250068 -0.118233780865448 0.32081104995009 -0.450431869521932
7173 0.0210170829838952 -0.257753192571227 -0.494326357172756 0.054236085223958 0.195345019874517 0.534044171092455 0.760319444999564 0.728303509327115 0.0147503631018509 0.65388396620066 0.682470264344541 0.399695752303185 0.267452700007237 0.523611608767333 0.761751453339372 0.622164308115757 -0.160708815486676 -0.0945401542679559 0.0125372593039656 -0.00966560354459532 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.56368055252595 -4.80172798434385 -4.72721923053551 0.441268718586332 0.237769507937921 -0.187463490305843 -0.19783077018276 0.584934534698582 0.216571451232405 -1.07647536196182 -0.736597491266739 -0.242303594251162 -0.518795513389935 -0.138375555656989 -0.352358569188202 0.148090216534752 -0.16612364582988 -0.218124065842298 0.251049087441834 0.167534868731519 0.166615522187311 -0.357742729046023 0.0442113667197011 -0.278423144349231 0.0533438816990522 -0.562858432646473
9706 0.172129750224276 -0.275881634232962 0.152262283064309 -0.201378632383089 0.840704788224668 0.471860293533106 0.861163312532644 0.2462602370649 0.302579539596614 0.29865074796573 0.499714482491378 0.16340793214105 0.224093110581167 0.956462585632211 0.737319455990994 0.658579716769258 -0.128201783966143 -0.316172857633374 -0.350667747489865 -0.125107425955979 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -4.01244795546438 -4.13232972490659 -4.16147923456043 0.17340812873156 0.297987968120701 -0.259688939380154 -1.37447340080291 0.43908549327439 0.673578565346053 -0.616268008154482 -0.775118662201785 0.71659238111266 0.101977852678629 -1.76541860101375 -0.875797959576562 0.161439336789996 0.113036186995598 0.13229970565821 -0.515315738502249 -0.00615824520808859 0.0904824546004842 -0.0224625714280745 -0.185533903222601 -0.0640538483177131 -0.0742179676405374 -0.260979470595083
[+] Show/hide bicluster #123 motif PSSM #1. bicluster 123 motif PSSM #1 Phaeodactylum tricornutum 11x4
POSITION A C G T
1 0 0 0 1
2 0 1 0 0
3 0.888889 0 0 0.111111
4 0 1 0 0
5 1 0 0 0
6 0 0 1 0
7 0 0 0 1
8 0 1 0 0
9 0.666667 0 0.111111 0.222222
10 0.111111 0 0.888889 0
11 0.222222 0 0.111111 0.666667 [+] Show/hide bicluster #123 motif PSSM #2. bicluster 123 motif PSSM #2 Phaeodactylum tricornutum 24x4
POSITION A C G T
1 0 0 0.25 0.75
2 0.333333 0.166667 0.083333 0.416667
3 0 0 0.166667 0.833333
4 0 0 0.333333 0.666667
5 0 0.25 0 0.75
6 0.083333 0.666667 0.25 0
7 0.166667 0 0.666667 0.166667
8 0.25 0 0.083333 0.666667
9 0 0.25 0 0.75
10 0 0.25 0.75 0
11 0.25 0 0.75 0
12 0.25 0 0.666667 0.083333
13 0.833333 0 0.166667 0
14 0 0.333333 0.333333 0.333333
15 0 0.916667 0 0.083333
16 0 0.083333 0.916667 0
17 0.666667 0 0.166667 0.166667
18 0.75 0 0 0.25
19 0 0.25 0.5 0.25
20 0 0.75 0.25 0
21 0 0.25 0.5 0.25
22 0.166667 0.166667 0 0.666667
23 0.25 0.083333 0.083333 0.583333
24 0 0.416667 0.416667 0.166667 |