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[+] Show/hide bicluster #197 rows and columns.
bicluster 197
Phaeodactylum tricornutum
19x79
[+] Show/hide bicluster #197 rows (genes).
bicluster 197 genes
Phaeodactylum tricornutum
19
[+] Show/hide bicluster #197 rows (short gene names).
bicluster 197 short names
Phaeodactylum tricornutum
19
short_name
[+] Show/hide bicluster #197 rows (long gene names).
bicluster 197 long names
Phaeodactylum tricornutum
19
long_name
[+] Show/hide bicluster #197 rows (NCBI RefSeq gene IDs).
bicluster 197 NCBI RefSeq IDs
Phaeodactylum tricornutum
0
[+] Show/hide bicluster #197 gene upstream sequences.
bicluster 197 upstream sequences
Phaeodactylum tricornutum
19
upstream
[+] Show/hide bicluster #197 columns (arrays; conditions).
bicluster 197 arrays
Phaeodactylum tricornutum
79
[+] Show/hide bicluster #197 ratios.
bicluster 197 ratios
Phaeodactylum tricornutum
19x79
GENES GSE12015_Si_free_11v18_2 GSE12015_Si_free_22v19_1 GSE12015_Si_free_22v19_2 GSE12015_Si_free_23v20_1 GSE12015_Si_free_23v20_2 GSE17237_highlight_12hr_1 GSE17237_highlight_12hr_2 GSE17237_highlight_12hr_3 GSE17237_highlight_24hr_1 GSE17237_highlight_24hr_3 GSE17237_highlight_24hr_3.1 GSE17237_highlight_30min_1 GSE17237_highlight_30min_2 GSE17237_highlight_30min_3 GSE17237_highlight_3hr_2 GSE17237_highlight_3hr_3 GSE17237_highlight_48hr_1 GSE17237_highlight_48hr_2 GSE17237_highlight_48hr_3 GSE17237_highlight_6hr_1 GSE17237_highlight_6hr_3 GSE31131_Cadmium_0.12mg_2 GSE34988_Ammonia_1 GSE34988_Ammonia_2 GSE34988_Ammonia_3 GSE34988_Ammonia_4 GSE34988_Cadmium_1 GSE34988_Cadmium_2 GSE34988_Cadmium_3 GSE34988_Cadmium_4 GSE34988_Cadmium_5 GSE34988_Control_3 GSE34988_Control_4 GSE34988_Control_5 GSE34988_Control_6 GSE34988_Copper_1 GSE34988_Mixture_1 GSE34988_Mixture_2 GSE34988_Mixture_3 GSE34988_Mixture_4 GSE34988_Mixture_5 GSE34988_Oil_2 GSE34988_Silver_1 GSE34988_Silver_2 GSE34988_Silver_3 GSE34988_Simazine_1 GSE34988_Simazine_2 GSE34988_Simazine_3 GSE34988_Simazine_4 GSE34988_Simazine_5 GSE42039_Dark_treated_48h_1 GSE42039_Dark_treated_48h_2 GSE42039_Dark_treated_48h_3 GSE42039_light_0.5h_1 GSE42039_light_0.5h_2 GSE42039_light_0.5h_3 GSE42039_light_24h_1 GSE42039_light_24h_2 GSE42039_light_24h_3 GSE42514_dark_8hr_light_3hr_2 GSE42514_light_0.5hr_1 GSE42514_light_0.5hr_2 GSE42514_light_10.5hr_1 GSE42514_light_10.5hr_2 GSE42514_light_15.5hr_2 GSE42514_light_6hr_1 GSE55959_BlueLight_0.5h_rep1 GSE55959_BlueLight_0.5h_rep2 GSE55959_BlueLight_0.5h_rep3 GSE55959_GreenLight_0.5h_rep1 GSE55959_GreenLight_0.5h_rep2 GSE55959_GreenLight_0.5h_rep3 GSE55959_RedLight_0.5h_rep1 GSE55959_RedLight_0.5h_rep2 GSE55959_RedLight_0.5h_rep3 GSE55959_RedLight_24h_rep3 GSE55959_RedLight_6h_rep1 GSE55959_RedLight_6h_rep2 GSE55959_RedLight_6h_rep3
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43162 0.156101356162478 -0.130176231336136 -0.241168014668932 0.36708726136979 0.487046368660876 2.13069932398625 1.23792608628224 0.916078677731715 1.61163339042626 1.57753894795768 1.63432579588449 1.43156783339589 -0.3543102638038 0.677507253691204 0.0863508032982326 0.858628586221577 1.12880221344944 0.864944627794463 1.32135773000059 1.35991891496915 1.34617522204213 0.388377042005104 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA -3.21830434018557 -3.42630090986135 -3.33071824609517 -1.70690486527439 -1.49020039397452 -1.50574078212775 -0.00235888880336533 0.0753839720079873 0.397773757083038 0.570385196725834 0.269668593195021 0.335308538749124 -0.934392752066173 -0.349129205855675 0.0994935706682786 0.0497950018104355 -1.50844182105649 -1.67209273966079 -1.57731000436076 -1.32223339314565 -1.24590650404338 -0.916272191218558 -0.519400351135479 -0.481834859306326 -0.640391343966165 -0.00804261214272299 -0.166120937480959 -0.409028381031185 -0.574350766431282
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47804 0.134610979390191 -0.318408111609673 -0.467290948287233 0.163868462350599 0.376457108700015 2.35422756470711 1.70707091741834 0.776296005470474 1.7549942026126 1.91886678035851 1.92630620324352 1.14490725812956 -0.368863112869783 0.804456332819867 0.387740115435231 0.94248794658332 1.40167470374919 0.847212369007411 1.20001278349572 1.15413752210868 1.45068570665674 0.406556924032751 0.923908284513935 0.829500851960644 0.91511721310564 1.14740690469082 -1.7299667858863 -1.45724325284984 -1.12854845608852 -1.07628156722236 -1.98680208999061 0.0965475985560503 0.353737531667528 0.0954253381370754 0.160493891524784 0.23965212010052 1.30680091682731 1.45463963887909 1.72936834766709 0.946371094572698 1.2158290206159 0.0954081706011061 0.0791771289097288 0.125788121614239 0.0282414366424771 -0.519229246834154 -0.552661621606649 -0.668728132848088 -0.453878109575378 -0.704090803091537 -3.99285614955472 -4.24937437554462 -4.13520554839861 -1.68750610194372 -1.75888163028943 -1.63288493166952 0.0737383274307186 0.562834302907474 0.270894288159029 0.495179416701188 0.231751287746853 0.154701406891829 -1.18362717949183 -0.773955716655719 -0.0610627822913353 -0.250261669040649 -1.61908423171683 -1.47918381765896 -1.98820349407596 -1.36489304035032 -1.31100840688618 -1.31972647935088 -0.648746475398424 -0.723742136193637 -0.889471279869189 -0.172827685410646 -0.341974878305355 -0.0904549688510366 -0.350619076604554
48699 0.209034794469236 -0.553174119818463 -0.602687691022192 0.139515739950869 0.474857654012485 2.69632153634898 1.90217386794946 1.11590085791967 1.94133710222328 2.1317667972099 1.96985241800288 1.57389639018333 -0.453771874598857 0.826714094550334 0.351536352804815 1.05948539497239 1.52090186488285 1.18672026885348 1.77296595327646 1.48653494523372 1.57138570202734 0.364652447802974 1.13162552456942 1.22164357266894 1.23315997920756 1.73749996404936 -1.63492913701799 -1.37544288928038 -0.954243229919067 -1.13915168658625 -1.66946860396071 0.154420828211907 0.212791005678032 0.166007514013404 0.163737122970593 0.493379237270754 1.08810093238846 1.32205834541281 1.27482677468393 0.865364232355906 1.21417777636446 0.555321715120783 0.194164162735742 0.122392434530725 -0.0114195983377299 -0.219662600784226 -0.252958726938944 -0.250169499938082 -0.0694868140148815 -0.187560314349737 -3.21274239331248 -3.46608719418115 -3.29743645928684 -1.52520616022004 -1.78263412326067 -1.70949793435303 0.268507004082194 0.178119549234001 0.316102290817874 0.489909221021501 0.0113476066580495 0.144338559795184 -1.41358597723363 -0.774429190938124 -0.204227669740621 -0.293410589948941 -1.64489735512054 -2.07559225407367 -1.91018269340063 -1.89163248194203 -1.40938601585037 -1.24711466132645 -1.03355021813225 -0.500746069794263 -1.10528983135165 -0.268246938040335 -0.481696417200668 -0.534257988352988 -0.515438762792018
50259 0.19976360226851 -0.122758292470742 -0.375326808214038 0.227744953866892 0.482522523683744 2.26504507320439 2.02425081567316 1.06910737886236 1.95060831637435 2.19966075438391 2.02024138252965 1.43746346387112 -0.403967194277698 1.33321452038321 0.581583871855598 0.871139316303807 1.54939255202145 0.94639074331951 1.70719264800916 1.30209631200037 1.47675149056933 0.273638052245029 0.986516281509195 1.3410329004701 1.39500793362905 1.23895388134458 -1.91656967511372 -1.57891001643002 -1.39749421195678 -1.38809004786024 -2.28937140781038 0.0371407879736514 0.309098035831902 0.0047899310995308 0.112433811477559 0.44136091372944 1.1358657884088 1.3790866182047 1.40587868872502 0.842460109980649 1.18482593746266 0.193392841088313 -0.0736893988642639 0.170255689191143 0.231827910036689 -0.815340756067282 -0.906745846814785 -0.893941285782822 -0.606924015011074 -1.25927657034464 -3.82017896184453 -3.98418468691406 -3.88886690484716 -1.40684500409204 -1.35754832233616 -1.14151548808514 0.375560094848706 0.386947237067299 0.311409504660767 0.607801704977568 0.316858730592374 0.406582593676938 -0.799152281870234 -0.368699647409825 -0.118442202597538 0.278161819424629 -1.44636549574351 -1.02363474250004 -1.16783273317944 -1.19253444498068 -1.22782810710139 -0.945235858331688 -0.512146218191336 -0.478438328609031 -0.70969581190206 -0.273321564204239 -0.000880429177450711 -0.275330097324571 -0.0989128884607128
[+] Show/hide bicluster #197 motif PSSM #1. bicluster 197 motif PSSM #1 Phaeodactylum tricornutum 16x4
POSITION A C G T
1 0 0 0.090909 0.909091
2 0.090909 0.181818 0.272727 0.454545
3 0 0.090909 0 0.909091
4 0.818182 0 0 0.181818
5 0 0 1 0
6 0 0 0.090909 0.909091
7 0.727273 0 0.090909 0.181818
8 0.909091 0 0 0.090909
9 0.818182 0 0.181818 0
10 0 0.454545 0.454545 0.090909
11 0.454545 0.454545 0 0.090909
12 0 0 1 0
13 0.090909 0.090909 0.727273 0.090909
14 0.272727 0 0 0.727273
15 0.818182 0 0.181818 0
16 0.727273 0.181818 0.090909 0 [+] Show/hide bicluster #197 motif PSSM #2. bicluster 197 motif PSSM #2 Phaeodactylum tricornutum 20x4
POSITION A C G T
1 0.052632 0.052632 0 0.894737
2 0.157895 0.421053 0.105263 0.315789
3 0 0.052632 0.789474 0.157895
4 0.473684 0.105263 0.263158 0.157895
5 0.315789 0.368421 0.052632 0.263158
6 0.894737 0.052632 0 0.052632
7 0.315789 0.263158 0.315789 0.105263
8 0 0.210526 0.210526 0.578947
9 0.842105 0 0.105263 0.052632
10 0.842105 0 0.157895 0
11 0.631579 0 0.210526 0.157895
12 0.736842 0 0.210526 0.052632
13 0.315789 0.210526 0.315789 0.157895
14 0.052632 0.105263 0 0.842105
15 0.631579 0.157895 0.052632 0.157895
16 0 0.789474 0.210526 0
17 0.105263 0.315789 0.578947 0
18 0.894737 0 0.105263 0
19 0.631579 0.210526 0.157895 0
20 0.210526 0.315789 0 0.473684 |