PHATRDRAFT_10251 (HELICc)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_10251	chr_3	(HELICc)	676983	678046	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0200

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0127	0.23	1.1 59

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	57.6329	1.05E-10	217 - 297	superfamily	238034
HELICc superfamily		Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	57.6329	1.05E-10	217 - 297	superfamily	238034
SrmB		Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /...	-	55.5666	6.18E-09	187 - 300	multi-dom	223587

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
31932		Not available	195656	212511	Not available	Cre06.g270900.t1.2	AT5G39840.1	537681

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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