PHATRDRAFT_10768 rna-binding s4 domain protein (RsuA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_10768 chr_4 rna-binding s4 domain protein (RsuA) 168807 169622 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0118
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 48.3998 5.25E-08 8 - 61 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 48.3998 5.25E-08 8 - 61 superfamily 263930
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 168.738 8.39E-52 62 - 242 superfamily 260207
RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation,... - 215.569 3.68E-69 7 - 240 multi-dom 224108

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
23202 Not available 232158 233520 466446 Cre02.g095121.t1.1 Not available 503796

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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