PHATRDRAFT_12095 iron inhibited abc transporter 2 (Uup)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12095	chr_7	iron inhibited abc transporter 2 (Uup)	194726	196806	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0229

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0250	0.22	600 43000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ABCF_EF-3		ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a...	cl17201	144.899	8.96E-41	46 - 273	specific	213188
ABC_ATPase superfamily		ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of...	-	144.899	8.96E-41	46 - 273	superfamily	266551
ABCF_EF-3		ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a...	cl17201	144.899	8.96E-41	46 - 273	specific	213188
ABC_ATPase superfamily		ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of...	-	144.899	8.96E-41	46 - 273	superfamily	266551
ABC_tran_2 superfamily		ABC transporter; This domain is related to pfam00005.	-	93.4107	7.80E-23	272 - 357	superfamily	257346
ABC_tran_2 superfamily		ABC transporter; This domain is related to pfam00005.	-	93.4107	7.80E-23	272 - 357	superfamily	257346
Uup		ATPase components of ABC transporters with duplicated ATPase domains [General function prediction...	-	535.293	0	43 - 575	multi-dom	223562

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	208417	160370	68429	Cre11.g467781.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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