PHATRDRAFT_12366 rna recognition motif familyexpressed (RRM_SF superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12366	chr_8	rna recognition motif familyexpressed (RRM_SF superfamily)	683164	683481	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0234

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0082	0.37	3.1 500

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	88.5847	6.14E-24	19 - 101	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	66.1238	2.54E-14	15 - 105	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
23196		Not available	182133	164450	Not available	Cre13.g586916.t1.1	AT3G13570.1	537360

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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