PHATRDRAFT_12674 nonhistone chromosomal protein (HMGB-UBF_HMG-box)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_12674	chr_9	nonhistone chromosomal protein (HMGB-UBF_HMG-box)	862453	862722	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0184

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0122	0.44	18000 15000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HMGB-UBF_HMG-box		HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins....	cl00082	73.4309	1.50E-18	21 - 86	specific	238686
HMG-box superfamily		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	-	73.4309	1.50E-18	21 - 86	superfamily	260179

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
36787		Not available	145199	260161	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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