PHATRDRAFT_13235 dead (asp-glu-ala-asp) box polypeptide 10 (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13235 chr_11 dead (asp-glu-ala-asp) box polypeptide 10 (DEADc) 126061 127596 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0202

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0200
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 250.48 5.43E-80 49 - 256 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 250.48 5.43E-80 49 - 256 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 107.324 1.20E-27 270 - 400 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 107.324 1.20E-27 270 - 400 superfamily 238034
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 76.2988 3.83E-17 437 - 499 superfamily 258212
DUF4217 superfamily Domain of unknown function (DUF4217); This short domain is found at the C-terminus of many helicase... - 76.2988 3.83E-17 437 - 499 superfamily 258212
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 157.269 1.07E-44 66 - 256 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
32736 Not available 184973 185193 64940 Cre03.g156150.t1.1 AT5G54910.1 509429

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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