PHATRDRAFT_15555 (PRK08566)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_15555 chr_20 (PRK08566) 605183 610303 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0072
 0.33

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_II_RPB1_N Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain; The two... cl19114 1291.34 0 1 - 799 specific 259848
RNAP_largest_subunit_N superfamily Largest subunit of RNA polymerase (RNAP), N-terminal domain; This region represents the N-terminal... - 1291.34 0 1 - 799 superfamily 267467
RNAP_II_Rpb1_C Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain; RNA polymerase... cl11429 660.823 0 993 - 1417 specific 132720
RNAP_largest_subunit_C superfamily Largest subunit of RNA polymerase (RNAP), C-terminal domain; RNA polymerase (RNAP) is a large multi... - 660.823 0 993 - 1417 superfamily 142634
RNA_pol_Rpb1_6 superfamily RNA polymerase Rpb1, domain 6; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 245.474 1.09E-73 819 - 1011 superfamily 252929
RNA_pol_Rpb1_6 superfamily RNA polymerase Rpb1, domain 6; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 245.474 1.09E-73 819 - 1011 superfamily 252929
CTD superfamily Spt5 C-terminal nonapeptide repeat binding Spt4; The C-terminal domain of the transcription... - 53.6796 3.62E-08 1583 - 1698 superfamily 215026
CTD superfamily Spt5 C-terminal nonapeptide repeat binding Spt4; The C-terminal domain of the transcription... - 53.6796 3.62E-08 1583 - 1698 superfamily 215026
CTD superfamily Spt5 C-terminal nonapeptide repeat binding Spt4; The C-terminal domain of the transcription... - 53.6796 3.62E-08 1583 - 1698 superfamily 215026
CTD superfamily Spt5 C-terminal nonapeptide repeat binding Spt4; The C-terminal domain of the transcription... - 53.6796 3.62E-08 1583 - 1698 superfamily 215026

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 242566 Not available 451481 Not available Not available 330794

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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