PHATRDRAFT_15960 probable 23s rna-specific pseudouridine synthase d (rluA_subfam)
Phaeodactylum tricornutum

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_15960 chr_22 probable 23s rna-specific pseudouridine synthase d (rluA_subfam) 275898 277013 -
NCBI ID Ensembl Genomes exon ID
Not available Not available
Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0260
Normalized Mean Residue
Phatr_bicluster_0130
0.35
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 207.575 7.83E-66 82 - 278 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 207.575 7.83E-66 82 - 278 superfamily 260207
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 41.8514 1.58E-05 1 - 86 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 41.8514 1.58E-05 1 - 86 superfamily 263930
rluA_subfam pseudouridine synthase, RluA family; In E. coli, RluD (SfhB) modifies uridine to pseudouridine at... - 283.06 1.27E-93 1 - 300 multi-dom 161659
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 215175 198448 69322 Cre02.g078750.t1.1 AT1G76050.2 495472
KEGG description KEGG Pathway
Not available Not available
Not available -
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