PHATRDRAFT_16560 3-5 exoribonuclease ph component of the exosome (RNase_PH superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_16560	chr_27	3-5 exoribonuclease ph component of the exosome (RNase_PH superfamily)	62456	63325	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0388

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0117	0.31	480 9100

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RNase_PH superfamily		RNase PH-like 3'-5' exoribonucleases; RNase PH-like 3'-5'...	-	223.944	4.98E-72	1 - 261	superfamily	261591
COG2123		RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]	-	134.028	3.04E-37	2 - 267	multi-dom	225034

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
21742		Not available	199504	224082	78153	Cre03.g175000.t1.2	AT3G12990.3	502345

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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