PHATRDRAFT_18549 (Raptor_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_18549 chr_3 (Raptor_N) 504456 509053 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0083

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0067
 0.34

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 36.5236 0.00692976 554 - 636 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 36.5236 0.00692976 554 - 636 superfamily 237987
Raptor_N superfamily Raptor N-terminal CASPase like domain; This domain is found at the N-terminus of the Raptor protein... - 197.105 1.47E-57 2 - 144 superfamily 258678
Raptor_N superfamily Raptor N-terminal CASPase like domain; This domain is found at the N-terminus of the Raptor protein... - 197.105 1.47E-57 2 - 144 superfamily 258678
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 81.9976 6.20E-17 1012 - 1243 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 68.5767 4.56E-12 893 - 1248 multi-dom 225201
HEAT_2 HEAT repeats; This family includes multiple HEAT repeats. - 37.7059 0.00238438 583 - 641 multi-dom 257956

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
24683 Not available 201459 246784 252746 Cre08.g371957.t1.1 AT3G08850.1 483980

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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