PHATRDRAFT_18665 shm4 (serine hydroxymethyltransferase 4) glycine hydroxymethyltransferase (SHMT)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_18665	chr_3	shm4 (serine hydroxymethyltransferase 4) glycine hydroxymethyltransferase (SHMT)	884689	886280	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0114

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0120	0.36	4800 5800

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SHMT		Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-...	cl18945	605.736	0	16 - 449	specific	99733
AAT_I superfamily		Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent...	-	605.736	0	16 - 449	superfamily	267298

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	424674	Cre09.g411900.t1.1	Not available	545931

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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