PHATRDRAFT_19937 rna helicase (OB_NTP_bind)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_19937 chr_7 rna helicase (OB_NTP_bind) 298105 301515 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0131

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 114.357 4.85E-29 388 - 526 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 114.357 4.85E-29 388 - 526 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 65.722 2.35E-12 549 - 709 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 65.722 2.35E-12 549 - 709 superfamily 238034
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 125.103 3.28E-33 889 - 992 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 125.103 3.28E-33 889 - 992 superfamily 254381
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 123.481 9.41E-33 763 - 855 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 123.481 9.41E-33 763 - 855 superfamily 262181
DUF947 superfamily Domain of unknown function (DUF947); Family of eukaryotic proteins with unknown function. - 38.0296 0.00395009 155 - 220 superfamily 253564
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 101.415 5.50E-24 365 - 549 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 210694 Not available 418272 Cre24.g755347.t1.1 AT4G16680.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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