PHATRDRAFT_20857 splicing factor (RRM3_RBM39_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20857 chr_10 splicing factor (RRM3_RBM39_like) 573788 575917 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0315

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM3_RBM39_like RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins; This... cl17169 111.097 5.31E-29 595 - 678 specific 240731
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 76.4907 6.17E-17 288 - 363 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 76.4907 6.17E-17 288 - 363 superfamily 266524
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 76.4907 6.17E-17 288 - 363 superfamily 266524
RBM39linker superfamily linker between RRM2 and RRM3 domains in RBM39 protein; A conserved linker between the second and... - 38.83 0.000546178 572 - 614 superfamily 259650

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
4765 Not available 164728 130865 466113 Cre04.g213905.t1.1 AT2G16940.1 249442

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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