PHATRDRAFT_23399 (metH)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_23399 chr_23 (metH) 422038 428055 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0114

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0153
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an... cl00293 356.189 7.91E-114 648 - 880 specific 239020
B12-binding_like superfamily B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (... - 356.189 7.91E-114 648 - 880 superfamily 260332
MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent... cl00219 347.457 4.53E-110 345 - 601 specific 238381
Pterin_binding superfamily Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-... - 347.457 4.53E-110 345 - 601 superfamily 260272
MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and... cl14105 360.469 4.83E-114 1 - 306 specific 223719
S-methyl_trans superfamily Homocysteine S-methyltransferase; This is a family of related homocysteine S-methyltransferases... - 360.469 4.83E-114 1 - 306 superfamily 265425
Met_synt_B12 superfamily Vitamin B12 dependent methionine synthase, activation domain; Vitamin B12 dependent methionine... - 159.048 8.73E-44 948 - 1227 superfamily 251646
metH B12-dependent methionine synthase; Provisional - 1982.34 0 1 - 1241 multi-dom 236539

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
693 Not available 207237 213031 423073 Cre06.g250902.t1.1 Not available 313428

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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