PHATRDRAFT_23497 (ABC_subfamily_A)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_23497 chr_24 (ABC_subfamily_A) 312563 318950 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0355

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0100
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 314.828 1.97E-97 1475 - 1702 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 314.828 1.97E-97 1475 - 1702 superfamily 266551
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 314.828 1.97E-97 1475 - 1702 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 314.828 1.97E-97 1475 - 1702 superfamily 266551
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 43.4002 0.000170645 334 - 460 superfamily 266576
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 261.473 1.09E-77 604 - 880 multi-dom 224054
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 261.473 1.09E-77 604 - 880 multi-dom 224054
ABC2_membrane_3 ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family... - 65.8318 1.51E-11 314 - 537 multi-dom 257232
ABC2_membrane_3 ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family... - 65.8318 1.51E-11 314 - 537 multi-dom 257232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 172711 284283 Not available Cre03.g151400.t1.1 AT2G41700.1 562706

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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