PHATRDRAFT_30519 (PRK12999)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_30519 chr_23 (PRK12999) 405287 409428 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0327

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0018
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain; This family includes the... cl18962 441.1 1.27E-144 627 - 910 specific 163675
DRE_TIM_metallolyase superfamily DRE-TIM metallolyase superfamily; The DRE-TIM metallolyase superfamily includes 2-isopropylmalate... - 441.1 1.27E-144 627 - 910 superfamily 267315
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 106.346 7.52E-27 1184 - 1249 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 106.346 7.52E-27 1184 - 1249 superfamily 264355
PYC_OADA superfamily Conserved carboxylase domain; This domain represents a conserved region in pyruvate carboxylase (... - 270.53 2.88E-83 921 - 1133 superfamily 251291
PYC_OADA superfamily Conserved carboxylase domain; This domain represents a conserved region in pyruvate carboxylase (... - 270.53 2.88E-83 921 - 1133 superfamily 251291
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 228.725 4.49E-68 204 - 417 superfamily 266590
Biotin_carb_C Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... cl08365 169.901 1.18E-48 433 - 540 specific 214878
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 169.901 1.18E-48 433 - 540 superfamily 263607
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 132.607 1.18E-35 90 - 197 superfamily 249744

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 182998 Not available Not available Cre06.g258700.t1.1 Not available 523127

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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