PHATRDRAFT_34423 catalytic region-type peptidasecatalytic (rve)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_34423 chr_5 catalytic region-type peptidasecatalytic (rve) 530970 535055 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0450

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
rve superfamily Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the... - 55.4173 6.59E-09 852 - 977 superfamily 250040
rve superfamily Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the... - 55.4173 6.59E-09 852 - 977 superfamily 250040
gag_pre-integrs superfamily GAG-pre-integrase domain; This domain is found associated with retroviral insertion elements and... - 53.5148 1.11E-08 757 - 824 superfamily 258228
gag_pre-integrs superfamily GAG-pre-integrase domain; This domain is found associated with retroviral insertion elements and... - 53.5148 1.11E-08 757 - 824 superfamily 258228
zf-CCHC Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... cl15298 41.6709 8.01E-05 365 - 382 specific 189387
zf-CCHC superfamily Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C... - 41.6709 8.01E-05 365 - 382 superfamily 199156

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 234537 187116 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments