PHATRDRAFT_35813 atp binding alanine-trna ligase (PLN02961)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_35813	chr_8	atp binding alanine-trna ligase (PLN02961)	800449	801282	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0230

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0251	0.21	10000 89000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN02961		alanine-tRNA ligase	cl08469	318.18	3.20E-109	48 - 273	specific	178546
tRNA_SAD superfamily		Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of...	-	318.18	3.20E-109	48 - 273	superfamily	263673
COG2872		Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General...	-	99.7526	5.59E-25	14 - 269	multi-dom	225427

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
11693		Not available	Not available	250503	Not available	Not available	AT3G16565.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments