PHATRDRAFT_36597 transitional endoplasmic reticulum atpase ter94 (CDC48)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_36597 chr_10 transitional endoplasmic reticulum atpase ter94 (CDC48) 857612 860005 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0114

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0113
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 97.6019 2.37E-23 230 - 368 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 97.6019 2.37E-23 230 - 368 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 97.6019 2.37E-23 230 - 368 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 97.6019 2.37E-23 230 - 368 superfamily 267297
CDC48_N Cell division protein 48 (CDC48) N-terminal domain; This domain has a double psi-beta barrel fold... cl09929 49.1448 2.51E-07 5 - 85 specific 215012
MopB_CT superfamily Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large,... - 49.1448 2.51E-07 5 - 85 superfamily 263923
CDC48 AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members... - 661.987 0 5 - 763 multi-dom 233328

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
40348 Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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