PHATRDRAFT_39708 (ABC_subfamily_A)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_39708 chr_20 (ABC_subfamily_A) 512261 518679 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0338

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0032
 0.44

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 277.849 1.93E-84 1563 - 1781 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 277.849 1.93E-84 1563 - 1781 superfamily 266551
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 277.849 1.93E-84 1563 - 1781 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 277.849 1.93E-84 1563 - 1781 superfamily 266551
ABC2_membrane superfamily ABC-2 type transporter; ABC-2 type transporter. - 39.163 0.00472558 423 - 553 superfamily 266576
CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] - 237.976 1.44E-69 685 - 960 multi-dom 224054
drrA daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin... - 171.034 2.49E-46 1583 - 1876 multi-dom 130256
ABC2_membrane_3 ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family... - 83.551 3.08E-17 430 - 630 multi-dom 257232
ABC2_membrane_3 ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family... - 83.551 3.08E-17 430 - 630 multi-dom 257232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 429077 Not available Not available 494903

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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