PHATRDRAFT_41016 aspartyl-trna synthetase (aspC)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41016 chr_27 aspartyl-trna synthetase (aspC) 143131 144533 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0125

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0119
 0.39

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA... cl00268 390.774 1.72E-133 137 - 455 specific 238399
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 390.774 1.72E-133 137 - 455 superfamily 260313
AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces... cl19106 111.501 8.31E-30 17 - 117 specific 239815
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 111.501 8.31E-30 17 - 117 superfamily 267459
aspC aspartyl-tRNA synthetase; Provisional - 408.039 1.67E-138 14 - 460 multi-dom 235354

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
6988 Not available 178869 300590 Not available Cre06.g279150.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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