PHATRDRAFT_41785 eukaryotic initiation factor (PTZ00424)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41785 chr_3 eukaryotic initiation factor (PTZ00424) 521349 522461 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0202

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0083
 0.30

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 278.599 1.27E-92 1 - 199 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 278.599 1.27E-92 1 - 199 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 143.147 2.49E-41 210 - 339 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 143.147 2.49E-41 210 - 339 superfamily 238034
PTZ00424 helicase 45; Provisional - 558.288 0 1 - 370 multi-dom 185609

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
354 Not available 271459 Not available 451926 Cre03.g199647.t1.1 AT3G19760.1 352190

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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