PHATRDRAFT_42247 asparaginyl-trna synthetase (asnC)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42247 chr_19 asparaginyl-trna synthetase (asnC) 356590 357993 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0486

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0040
 0.38

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA... cl00268 428.523 4.19E-148 100 - 463 specific 238399
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 428.523 4.19E-148 100 - 463 superfamily 260313
EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli... cl19106 114.2 6.59E-31 4 - 87 specific 239813
Asp_Lys_Asn_RS_N superfamily Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (... - 114.2 6.59E-31 4 - 87 superfamily 267459
asnC asparaginyl-tRNA synthetase; Validated - 748.088 0 5 - 467 multi-dom 235176

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26191 Not available 184752 317557 443485 Cre03.g193800.t1.1 AT4G17300.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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