PHATRDRAFT_42809 tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide tpr_4:tetratricopeptide tpr_4 (TPR_12)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42809 chr_1 tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide... 1197042 1198013 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0015

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0111
 0.46

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.9384 5.47E-13 143 - 250 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 63.9384 5.47E-13 143 - 250 superfamily 238112
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 63.9354 3.19E-13 179 - 254 multi-dom 257749
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 63.9354 3.19E-13 179 - 254 multi-dom 257749
TPR_11 TPR repeat; TPR repeat. - 39.9895 7.77E-05 143 - 212 multi-dom 257739

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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