PHATRDRAFT_42841 gle1 rna export mediator-like (yeast (GLE1 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42841 chr_1 gle1 rna export mediator-like (yeast (GLE1 superfamily) 1286590 1289597 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0047

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GLE1 superfamily GLE1-like protein; The members of this family are sequences that are similar to the human protein... - 62.7123 4.83E-11 269 - 544 superfamily 254452
ZnF_C3H1 zinc finger; zinc finger. cl11592 51.8613 1.59E-08 871 - 896 specific 214632
zf-CCCH superfamily Zinc finger C-x8-C-x5-C-x3-H type (and similar); Zinc finger C-x8-C-x5-C-x3-H type (and similar). - 51.8613 1.59E-08 871 - 896 superfamily 264437
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 43.1044 0.000100164 180 - 344 superfamily 267466
DUF863 superfamily Plant protein of unknown function (DUF863); This family consists of a number of hypothetical... - 38.897 0.00570067 670 - 804 superfamily 253450
PspA_IM30 PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent... - 47.3757 4.02E-06 160 - 362 multi-dom 252314

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25284 Not available 269133 321812 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments