PHATRDRAFT_43214 (AFD_class_I superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43214 chr_1 (AFD_class_I superfamily) 2338537 2343510 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0011
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 358.477 1.33E-111 254 - 607 superfamily 266508
PP-binding Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached... cl09936 50.2607 2.52E-07 754 - 817 specific 249951
PP-binding superfamily Phosphopantetheine attachment site; A 4'-phosphopantetheine prosthetic group is attached... - 50.2607 2.52E-07 754 - 817 superfamily 263928
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 39.3456 0.00101834 982 - 1055 superfamily 260227
LbetaH superfamily Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each... - 39.3456 0.00101834 982 - 1055 superfamily 260227
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites... - 277.805 1.46E-80 66 - 611 multi-dom 223395
NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function; This domain is found... - 187.265 3.89E-49 928 - 1619 multi-dom 233832

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 225387 253765 194364 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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